Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033677 pacid=23143333 polypeptide=Lus10033677 locus=Lus10033677.g ID=Lus10033677.BGIv1.0 annot-version=v1.0 ATGGATTTCTTTGGAATCAGCTCTGATTCCACAGACATTCACATTCCAGATTATGCCCCTCTTTCCTGGTTCCTTACCTATGAAGCATCGGATTCTTTCC TCGTCGTTCTTCCTGTTGACATTGTTGCAGAAGGAATAGGTACTTGGAAGAATGAGTGCAGACAGGGAGAGCTGTCGCAGCACAAAATTCTCGTGGTCGA GGTTTTCGAGGGAGACACAGGTGGGACATGGCACTGGCGGAACTGGGGTGGATCACCGTCGAGAGTCTCCTGTTCCGAGATTAGTGAAACTCTTATGTTA AACATTGGTCTTGGTTTTAAGGATGTACCCTATGCGAGGACACCGTTTGAAGGACGAGTAGATGAAATCGGGAGCCGGAACCACCAGACCGCCAGTAGCA ATGACACCGTTTACAATCACAAACTAGCTAGAGGATCGACGACATAG
AA sequence Show only first row Show all	>Lus10033677 pacid=23143333 polypeptide=Lus10033677 locus=Lus10033677.g ID=Lus10033677.BGIv1.0 annot-version=v1.0 MDFFGISSDSTDIHIPDYAPLSWFLTYEASDSFLVVLPVDIVAEGIGTWKNECRQGELSQHKILVVEVFEGDTGGTWHWRNWGGSPSRVSCSEISETLML NIGLGFKDVPYARTPFEGRVDEIGSRNHQTASSNDTVYNHKLARGSTT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033677 [exp]	0	1
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	4.4	0.8785
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008614 [exp]	9.5	0.8625
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	10.6	0.8584
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10014869 [exp]	20.9	0.8483
AT2G29070			Ubiquitin fusion degradation U...		Lus10029298 [exp]	23.4	0.8621
AT4G00910			Aluminium activated malate tra...		Lus10033223 [exp]	26.5	0.8252
					Lus10030774 [exp]	27.2	0.8536
					Lus10015147 [exp]	28.0	0.8171
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10041646 [exp]	29.1	0.8265
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10020713 [exp]	31.6	0.8337

Compare expression of checked genes

Lus10033677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.