Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49190 161 / 2e-43 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 149 / 2e-39 O-acyltransferase (WSD1-like) family protein (.1) AT5G53390 148 / 5e-39 O-acyltransferase (WSD1-like) family protein (.1) AT1G72110 147 / 1e-38 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT3G49210 147 / 1e-38 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 141 / 2e-36 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 133 / 1e-33 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 132 / 3e-33 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 127 / 1e-31 O-acyltransferase (WSD1-like) family protein (.1) AT2G38995 116 / 5e-28 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017717 [exp] 920 / 0 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1) Lus10017718 [exp] 769 / 0 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 413 / 1e-140 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10033680 [exp] 400 / 2e-135 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10039843 [exp] 371 / 2e-124 AT5G53390 149 / 7e-40 O-acyltransferase (WSD1-like) family protein (.1) Lus10009718 [exp] 167 / 1e-45 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 159 / 1e-42 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 150 / 9e-40 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10014075 [exp] 80 / 7e-17 AT5G53390 156 / 5e-45 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G010500 [exp] 495 / 8e-173 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 493 / 3e-172 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 458 / 2e-158 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 439 / 9e-151 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 438 / 1e-150 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139501 [exp] 166 / 4e-48 AT5G53390 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 160 / 2e-43 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 145 / 4e-38 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 145 / 6e-38 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 127 / 8e-32 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF03007 [flax] [poplar] WES_acyltransf Wax ester synthase-like Acyl-CoA acyltransferase domain CL0149 [flax] [poplar] PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033678 pacid=23143507 polypeptide=Lus10033678 locus=Lus10033678.g ID=Lus10033678.BGIv1.0 annot-version=v1.0 ATGGAAATGAAGAAACAGCCATTGGAGCATGAGGTTAAAGAAGATGAAGAGGAACACCGGCGGAGCCCGGTGAGCCCATTCGGCGTCTACTTCCACAGCC AATTGATACAACTCTCAGTCATCGCCGTTCTCGAGATCGAACAACCCATCAGCATCCTTCACTCCGACATCGTCTCCCTTGTCCACACCCTCCTTCTCCC TCTCCACCCTCGATTTTCTTCCATCATTGTAACAGGGAAAGACGGAGAACAGCGATGGAAAAAAGTGGAAATAAACGTCAACGACCACATCAGAACCGCC GTCTTCCCGGCTGAAAAATCACTGGAATACTACGACAAATGCTTACAGGACTACCTCTCCAAGCTCTCCGCCGAGCAGTTCCCGGAGACCCATCCGCTGT GGGAGATCCACTTCTTCAAATACCCGACAACGACGGCGGCGGGTCACCTGATCTTCAAAATTCACCACGCCATTGGCGACGGCTACTCACTCATGGCGGG GCGCCTTTGTTTCAAGAGATCCGACGACCCGTCACTGCCGTTGACATTTCCCAACAACCGGATTCGGCGGCAGGATGATGACGTAGAAGGCGGCGGCGGC TGGAGGAGGACGAAGACTGCGGCTGTTTTTTCCAGGGTTTTGTCCGCGGCTGTGAACACGGCGTCGGATATGTGGCTGAGCTTCTCGAAGGCGAAGGTGG CCGCGGATGGTATCTCGCCGATACGGTCCGGGGAGATCGGCGTCGGGTACCGGCCGATCTCTGTGGCCACGATGACTTTCTCGCTTGATCAGATTAAGGA GATGAAGAGCCGTTTGGGAGTGACGGTAAATGACATCGTGACGAGCATTGTGTTTCTTGGGACACGGATGTACATGCAAGAAGTGAAACTAGGATCGGAA AATGCAGACACTACAGCGATCGTGCTACTAAACACGAGGATGCTACGAAGCTACAACTCAGTCAAGGACATGATGAAACTGGATACCGAATCACCATGGG GGAACCGGTTTGCTTTCCTGCACATCACCTTACCCAAGCTCATCGTCCCAAGAGACAATGCCGAAAACTGGACCGCGACGATGCGACGCCTTTCGATCGA GTTCTTGAAGGCTTCCCGTACGATTATCCAGAACAAGCGCTCCTCCATTGCCGTTCACCTCAATGCTAAGCTGCTCGATATTTACTGGAGACTCAAGGGC TCCGAGGCAGCAGCAACATATGTGTACTTGGCAGTGAAGAACACCAGCATGGCAATAACAAACATGATTGGGCCAACAGAGAAGATGACACTAGCTGATC ATCATGTCAAAGGCATGTACTTCCTCATCGCCGGCAATCCTCAGAACCTCACGGTTACAATGGTGAGCTACATGGGGCAGATGAGAGTAACTGTAGGTGC AGAGAAGGGCTTCATTGATCCCAACAAGCTCAAATCCTGCATTCAATCTGCTTTCGACCTGCTTCTCGACTCTACCAATTGA
AA sequence Show only first row Show all	>Lus10033678 pacid=23143507 polypeptide=Lus10033678 locus=Lus10033678.g ID=Lus10033678.BGIv1.0 annot-version=v1.0 MEMKKQPLEHEVKEDEEEHRRSPVSPFGVYFHSQLIQLSVIAVLEIEQPISILHSDIVSLVHTLLLPLHPRFSSIIVTGKDGEQRWKKVEINVNDHIRTA VFPAEKSLEYYDKCLQDYLSKLSAEQFPETHPLWEIHFFKYPTTTAAGHLIFKIHHAIGDGYSLMAGRLCFKRSDDPSLPLTFPNNRIRRQDDDVEGGGG WRRTKTAAVFSRVLSAAVNTASDMWLSFSKAKVAADGISPIRSGEIGVGYRPISVATMTFSLDQIKEMKSRLGVTVNDIVTSIVFLGTRMYMQEVKLGSE NADTTAIVLLNTRMLRSYNSVKDMMKLDTESPWGNRFAFLHITLPKLIVPRDNAENWTATMRRLSIEFLKASRTIIQNKRSSIAVHLNAKLLDIYWRLKG SEAAATYVYLAVKNTSMAITNMIGPTEKMTLADHHVKGMYFLIAGNPQNLTVTMVSYMGQMRVTVGAEKGFIDPNKLKSCIQSAFDLLLDSTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10033678 [exp]	0	1
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	1.4	0.8968
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	2.4	0.8799
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	2.4	0.8751
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10001395 [exp]	7.0	0.8295
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10015240 [exp]	11.5	0.8459
AT2G35736			unknown protein		Lus10000732 [exp]	13.1	0.7591
AT5G45840			Leucine-rich repeat protein ki...		Lus10015277 [exp]	13.7	0.8491
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	15.3	0.8462
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10005716 [exp]	16.7	0.7570
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10026355 [exp]	20.4	0.7803

Compare expression of checked genes

Lus10033678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.