Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69770 89 / 2e-20 CMT3 chromomethylase 3 (.1) AT4G19020 75 / 8e-16 CMT2 chromomethylase 2 (.1) AT1G80740 66 / 2e-12 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017720 [exp] 169 / 8e-49 AT1G69770 855 / 0.0 chromomethylase 3 (.1) Lus10014315 [exp] 129 / 9e-35 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 123 / 1e-32 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10010796 [exp] 48 / 2e-06 AT4G19020 790 / 0.0 chromomethylase 2 (.1) Lus10008527 [exp] 43 / 0.0001 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008492 [exp] 42 / 0.0001 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10016308 [exp] 39 / 0.0002 AT4G19020 58 / 1e-11 chromomethylase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009600 [exp] 104 / 4e-26 AT1G69770 852 / 0.0 chromomethylase 3 (.1) Potri.003G215800 [exp] 93 / 5e-22 AT1G69770 221 / 7e-62 chromomethylase 3 (.1) Potri.003G100000 [exp] 67 / 4e-13 AT4G19020 1017 / 0.0 chromomethylase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Lus10033679 pacid=23143443 polypeptide=Lus10033679 locus=Lus10033679.g ID=Lus10033679.BGIv1.0 annot-version=v1.0 ATGCTTCCATTTGACTGGATTTTCATTAACAGTGACGATGATGAAGATGAGGTTATGGAAGGTCGCCGGCATTATTCACGAGCTGAAGTTGATGGGGTTG AATATAAACTTAATGATAATGCACATGTGGAGGGCGAAGATGGTCTGGATAATTATATATGCAAGATAGTGGAAATGTTTGAGGATGTTGATGCAGATCT ACATTTCACTGCTCAGTGGTACTATAGAGCTACAGACACGTTGGCAAAGATTATTGAAGAATCTCATCCAATAGACAAGAAGCGAGTTTTCTGGTCGGAA GCTCATCCAATAGTCTGCACAGTTTCATTTCATTTCTCGCTTTCATCTGAACAACTCGAGTTATTGGATGCAACCCCAATGAATATAATGGTGGCTTTAT GTGTGGGTGGTTGCAGATACATCCAGGTTGGGAATGCAGTAGTAGTACCCGTAGCTCGAGCTCTCGGATTCTCGCTAGGGGAGGCTCTGATACATAATGT CGAGCGACAGCCTCTATTCACCTTGCCGAGTAACTACCTTGATATAGCAAATCCGACTGCTTCAGCTTCATCACAGGACGATGCCTGA
AA sequence Show only first row Show all	>Lus10033679 pacid=23143443 polypeptide=Lus10033679 locus=Lus10033679.g ID=Lus10033679.BGIv1.0 annot-version=v1.0 MLPFDWIFINSDDDEDEVMEGRRHYSRAEVDGVEYKLNDNAHVEGEDGLDNYICKIVEMFEDVDADLHFTAQWYYRATDTLAKIIEESHPIDKKRVFWSE AHPIVCTVSFHFSLSSEQLELLDATPMNIMVALCVGGCRYIQVGNAVVVPVARALGFSLGEALIHNVERQPLFTLPSNYLDIANPTASASSQDDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10033679 [exp]	0	1

Compare expression of checked genes

Lus10033679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.