Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49210 165 / 4e-45 O-acyltransferase (WSD1-like) family protein (.1) AT3G49190 160 / 2e-43 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 158 / 9e-43 O-acyltransferase (WSD1-like) family protein (.1) AT5G53390 153 / 5e-41 O-acyltransferase (WSD1-like) family protein (.1) AT1G72110 152 / 8e-41 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT5G22490 147 / 9e-39 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 139 / 5e-36 O-acyltransferase (WSD1-like) family protein (.1) AT5G37300 134 / 2e-34 WSD1 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 132 / 2e-33 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 131 / 5e-33 O-acyltransferase (WSD1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017721 [exp] 885 / 0 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10017718 [exp] 420 / 3e-143 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10033678 [exp] 413 / 1e-140 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10017717 [exp] 406 / 2e-137 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1) Lus10039843 [exp] 357 / 4e-119 AT5G53390 149 / 7e-40 O-acyltransferase (WSD1-like) family protein (.1) Lus10009718 [exp] 166 / 2e-45 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 145 / 2e-38 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 140 / 6e-36 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10014075 [exp] 92 / 5e-21 AT5G53390 156 / 5e-45 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139600 [exp] 546 / 0 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 541 / 0 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010500 [exp] 488 / 2e-170 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 484 / 8e-169 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 475 / 3e-165 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139501 [exp] 188 / 6e-57 AT5G53390 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 165 / 4e-45 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 160 / 2e-43 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 143 / 3e-37 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 132 / 2e-33 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF03007 [flax] [poplar] WES_acyltransf Wax ester synthase-like Acyl-CoA acyltransferase domain CL0149 [flax] [poplar] PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033680 pacid=23143316 polypeptide=Lus10033680 locus=Lus10033680.g ID=Lus10033680.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCGCACCATGAAGACGCGACAACGATGGAGTACTCCGAACCGGTGAGCCCGACTGGCGAATACTTGAGCACCTCCGTCTTCACACTCTCCA TTATAGCGGTCCTCGAATCCGAAACTCCGCTCGACGATCTCCAAACTCGTTCTCTGCTTCACGATCTGTTCCTCCCCATCAGCCCCCGGTTCTCCTCCGT CATGGTTACAAATGCAAGAGGCGTGAAGAAGTGGAAGAAGGTACAAGTAAAGTTGGATGATCACATCAAAGCACCAAAGTTTCCAACAAACATGTCAACA GACTTCTACGACAAGTGCCTCGAAAAGTACTTATCGTATTTGGGGATGTCACCGTTTCCGGAAGGTAAACCCTTGTGGGAAGTTCATGTCATAAAGTACC CTACGAGTGGTGCGGCCGGAAGCATTATCTTCCGGTTGCACCACTCCCTCGGTGACGGCTACTCCTTGATGGGCGCGCTTCTTTCCTGCTTGAAAAGGGC CGATGATCCTTTACTTCCGTTAACTTTCCCGTCCCAGGGAAAAAGTAGTAGCGGTGGTGGTTGTAGTGTGACCGGATTGGTTTCTTCTACGGTCATGAAT ACGGTGTCAGATCTTTGCTCGAAGGGTGGGTTGGTGGAGGATAGCAAATCAGCAGTGCGATCGGGACACGACTTGGTTGAGTTCTCGGACACTTCGATCG TGACCATGAATTTTTCCATGGATGATGTCAAGCAAATCAAGTTGAAACTTGGGGTGACAGTGAACGATGTCATATGCGGTGCAATATTCCTCGGAGTTCG AATCTACATGGAAGGGGTTGATGCAGGGTCAGGGTTCAGTGCAGAGGCAACATCACTAGTTCTGCTCAACACAAGAATGGTTCATCAGGGCTACAAATCA GTGAAGGAAATGGTGAAGCCTGGATCCGACTTGCCCTGGGGCAACCATTTCGCCTTCCTGCTCGTCTCGGTTCCTAAGCTACCCGATCTCAGCCAAGACG TTATTGGTTCGGGTACTTCTCTCAGGTTCGACCCTCTCAGGTTTGTGCTCAAGACTCATCAAATCGTCAAGCGAAAAAGGACCTCGTTGACCCTCTACTT CACGGCCAAGTACCTCCAACTTCTGAGGAAGTTGCGAGGCCCTGAGGCCGTTTCTCGATACTTGTATGACACGATGAAGAACACGAGTTTCGGAATAACG AACGTTATAGGTCCAGTCGAGAAGATGGCTTTGGCGAACCATCCGATCAAAGGCTTGTACTTTCTCGTCACAGGTGCACCTCAGAGTATGAATGTCTCGA TAATGAGCTACGTGAACCAACTTCGGGTTGCTGTAAAAGTGGAGAGGGACTTCATAGATTCTCAGAAGTTGAAGTGTTGCATAGAAGAATCTTTTGCCAA GATTTACGAAGCTGCTTGTGGAAGGAAATAA
AA sequence Show only first row Show all	>Lus10033680 pacid=23143316 polypeptide=Lus10033680 locus=Lus10033680.g ID=Lus10033680.BGIv1.0 annot-version=v1.0 MAAAHHEDATTMEYSEPVSPTGEYLSTSVFTLSIIAVLESETPLDDLQTRSLLHDLFLPISPRFSSVMVTNARGVKKWKKVQVKLDDHIKAPKFPTNMST DFYDKCLEKYLSYLGMSPFPEGKPLWEVHVIKYPTSGAAGSIIFRLHHSLGDGYSLMGALLSCLKRADDPLLPLTFPSQGKSSSGGGCSVTGLVSSTVMN TVSDLCSKGGLVEDSKSAVRSGHDLVEFSDTSIVTMNFSMDDVKQIKLKLGVTVNDVICGAIFLGVRIYMEGVDAGSGFSAEATSLVLLNTRMVHQGYKS VKEMVKPGSDLPWGNHFAFLLVSVPKLPDLSQDVIGSGTSLRFDPLRFVLKTHQIVKRKRTSLTLYFTAKYLQLLRKLRGPEAVSRYLYDTMKNTSFGIT NVIGPVEKMALANHPIKGLYFLVTGAPQSMNVSIMSYVNQLRVAVKVERDFIDSQKLKCCIEESFAKIYEAACGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	0	1
					Lus10001533 [exp]	1.4	0.9661
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	2.0	0.9589
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	3.0	0.9587
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	5.7	0.9406
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	7.7	0.9351
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10023335 [exp]	8.4	0.9202
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	9.5	0.9146
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10013550 [exp]	9.5	0.9142
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	10.6	0.9040
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029981 [exp]	10.7	0.9229

Compare expression of checked genes

Lus10033680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.