Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22930 605 / 0 PYR4, DHOASE DIHYDROOROTASE, pyrimidin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139700 [exp] 629 / 0 AT4G22930 594 / 0.0 DIHYDROOROTASE, pyrimidin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01979 [flax] [poplar] Amidohydro_1 Amidohydrolase family
Representative CDS sequence Show only first row Show all	>Lus10033681 pacid=23143349 polypeptide=Lus10033681 locus=Lus10033681.g ID=Lus10033681.BGIv1.0 annot-version=v1.0 ATGGCGGACGAGCTAACTATCACCCTTCCAGACGACTGGCATCTCCACCTCCGCGATGGCGACCTTCTTCAAGCTGTCGTCCCTCACAGCTCAAGCCATT TTGGAAGGGCGATTGTGATGCCGAATTTGAAGCCTCCGATTACCACCACCGCTGCGGCTGTGGCTTATCGAGATTCTATTCTCAAAGCCTTGCCTGCTGG TGGTAACTTCACTCCTCTTATGACACTTTACTTGACGGACACCACTAGTCCTGAGGAGATCAAGCTTGCGAAAAAAAGTGGGGTGGTTTATGGGGTAAAG CTGTATCCTGCTGGAGCTACGACAAATTCACAAGATGGAGTTACTGATCTTTTCGGGAAATGTCTGGCTGTGCTGGAGGAGATGGTTGAGCAGAACATGC CTTTGCTGGTCCATGGGGAGGTCACAGATCCAAGAATCGATGTTTTCGATCGTGAGAAAGTCTTCATCGATACAATTTTACAACCTTTAATAAAAAGGCT ACCAAAGCTGAAGGTAGTAATGGAGCATATTACAACAATGGATGCTGCAAAGTTTGTTGAATCCTGCAATGAAGGATCTGTCGCGGCCACAGTCACCCCA CAACATCTTCTTCTCAATAGAAATGCTTTATTCCAAGGAGGATTGCAGCCACATAGTTATTGTCTTCCAGTTCTCAAACGAGAAACCCATCGACATGCAA TTGTTTCTGCTGTTACTGGTGGAAGCAAAAGATTCTTCCTTGGAACCGATAGTGCACCGCACGAGAGACGAAGAAAAGAATCTTCTTGTGGCTGTGCTGG AGTTTACAATTCCCCCGTCGCCCTGTCAGCATACGCTAAGGTTTTCGAAGAGGCTGGAGCACTTGACAAGCTGGAAGCTTTCACAAGTTTCAATGGCCCG GACTTCTATGGCCTACCAAGGAACACGTCGAAGATCAAACTGACCAGGACTCCATGGAAGGTACCCGAGTCTTTCTCGTTTTCGTTCGGGGAGATTGTTC CCATGTTTGCCGGACAAATGCTGGATTGGAAACCGTCTCCCATCTGA
AA sequence Show only first row Show all	>Lus10033681 pacid=23143349 polypeptide=Lus10033681 locus=Lus10033681.g ID=Lus10033681.BGIv1.0 annot-version=v1.0 MADELTITLPDDWHLHLRDGDLLQAVVPHSSSHFGRAIVMPNLKPPITTTAAAVAYRDSILKALPAGGNFTPLMTLYLTDTTSPEEIKLAKKSGVVYGVK LYPAGATTNSQDGVTDLFGKCLAVLEEMVEQNMPLLVHGEVTDPRIDVFDREKVFIDTILQPLIKRLPKLKVVMEHITTMDAAKFVESCNEGSVAATVTP QHLLLNRNALFQGGLQPHSYCLPVLKRETHRHAIVSAVTGGSKRFFLGTDSAPHERRRKESSCGCAGVYNSPVALSAYAKVFEEAGALDKLEAFTSFNGP DFYGLPRNTSKIKLTRTPWKVPESFSFSFGEIVPMFAGQMLDWKPSPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22930		PYR4, DHOASE	DIHYDROOROTASE, pyrimidin 4 (....		Lus10033681 [exp]	0	1
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10038010 [exp]	2.2	0.9288
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10034105 [exp]	4.5	0.8848
AT1G63980			D111/G-patch domain-containing...		Lus10024674 [exp]	7.7	0.9048
AT1G21480			Exostosin family protein (.1.2...		Lus10028632 [exp]	10.0	0.9048
AT1G65900			unknown protein		Lus10007381 [exp]	16.1	0.9085
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10036980 [exp]	17.7	0.9038
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	20.2	0.8958
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	20.6	0.9057
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	21.0	0.8819
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10021040 [exp]	22.0	0.8951

Compare expression of checked genes

Lus10033681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.