Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19950 66 / 7e-13 RING/U-box superfamily protein (.1) AT5G59550 62 / 2e-11 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G37270 58 / 2e-10 RING/U-box superfamily protein (.1) AT5G37230 57 / 3e-10 RING/U-box superfamily protein (.1) AT5G37250 57 / 4e-10 RING/U-box superfamily protein (.1) AT3G46620 58 / 5e-10 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G13228 58 / 6e-10 RING/U-box superfamily protein (.1) AT1G68180 57 / 6e-10 RING/U-box superfamily protein (.1) AT4G12190 53 / 1e-09 RING/U-box superfamily protein (.1) AT4G05350 55 / 2e-09 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017722 [exp] 316 / 3e-111 AT3G19950 64 / 5e-12 RING/U-box superfamily protein (.1) Lus10006279 [exp] 72 / 2e-15 AT1G18760 62 / 2e-11 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10034793 [exp] 69 / 2e-14 AT5G59550 48 / 9e-07 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10012376 [exp] 68 / 2e-14 AT3G46620 60 / 3e-11 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028009 [exp] 68 / 3e-14 AT5G59550 57 / 5e-10 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10020558 [exp] 67 / 3e-14 AT1G18760 56 / 1e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10007628 [exp] 68 / 2e-13 AT4G12140 60 / 2e-10 RING/U-box superfamily protein (.1) Lus10018167 [exp] 61 / 4e-11 AT3G19950 75 / 1e-15 RING/U-box superfamily protein (.1) Lus10012819 [exp] 61 / 5e-11 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118000 [exp] 69 / 3e-14 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G107000 [exp] 68 / 9e-14 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.005G062400 [exp] 65 / 9e-13 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.002G083001 [exp] 64 / 3e-12 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G168300 [exp] 62 / 6e-12 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 62 / 1e-11 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 61 / 3e-11 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 60 / 1e-10 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.019G086601 [exp] 57 / 8e-10 AT1G14200 60 / 3e-11 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 54 / 5e-09 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10033682 pacid=23143254 polypeptide=Lus10033682 locus=Lus10033682.g ID=Lus10033682.BGIv1.0 annot-version=v1.0 ATGTCGCACTCAAGAACCGCAGCTGATTTCCGGCAGCAAAGAAGAGGAAACCCCGACGACTGGGAATTCACCGATGATGTTCTGATTCTCAAAGGTACAA CCCTCTCCCCGCCGCTTCAGTATCCACTCACTTCCTCGCACCAGATGGAGATGATCAATCGAGTTCACGAATTCGAAACTAGAACAAGGACAGCAGCAAC AAACGACAACAACAACAACTCCGGCGACGACCCCGCCGGGATGTTAGGTCCGGCGAGTCGGATAGTGGTAGAGCATGATCTGGTGGAAGGAACTGTTCTG ATAAGCGAAGTCGAACTGGAAAGAGAGCCGATGTCGGTACCTGAATACGGCTTTCATCAGTTCGTCACGACCCCTGCTCCCGAATCTGTAATCGAAGGGC TCGAAAGGCTCGAAATCGGCGGAGTAATGGCCGGAAGAGAAGAAGGCGACTGTGCGATTTGTCTAGAGGAGATGGAGGAAAGTGGGGGAGAAAGAGTGAT AATAAGAATGGGGTGTGGTCATATGTTCCATGAGAGTTGCTCTGTTTCTTGGCTCCGTGTTTCCAACTTTTGCCCCCTGTGCCGATTTCTCTGTTCTTAA
AA sequence Show only first row Show all	>Lus10033682 pacid=23143254 polypeptide=Lus10033682 locus=Lus10033682.g ID=Lus10033682.BGIv1.0 annot-version=v1.0 MSHSRTAADFRQQRRGNPDDWEFTDDVLILKGTTLSPPLQYPLTSSHQMEMINRVHEFETRTRTAATNDNNNNSGDDPAGMLGPASRIVVEHDLVEGTVL ISEVELEREPMSVPEYGFHQFVTTPAPESVIEGLERLEIGGVMAGREEGDCAICLEEMEESGGERVIIRMGCGHMFHESCSVSWLRVSNFCPLCRFLCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19950			RING/U-box superfamily protein...		Lus10033682 [exp]	0	1
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	3.2	0.8867
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	3.5	0.8851
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10020272 [exp]	4.9	0.8684
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	6.0	0.8397
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008614 [exp]	14.1	0.8585
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	18.1	0.8353
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10021206 [exp]	26.1	0.8124
AT2G43570		CHI	"chitinase, putative", chitina...		Lus10014253 [exp]	28.1	0.6611
AT5G46030			unknown protein		Lus10014995 [exp]	28.6	0.8121
AT2G27410	B3		Domain of unknown function (DU...		Lus10027286 [exp]	29.8	0.8556

Compare expression of checked genes

Lus10033682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.