Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32480 243 / 1e-79 Protein of unknown function (DUF506) (.1) AT2G20670 219 / 4e-70 Protein of unknown function (DUF506) (.1) AT3G07350 120 / 7e-32 Protein of unknown function (DUF506) (.1) AT4G14620 110 / 6e-28 Protein of unknown function (DUF506) (.1) AT3G25240 107 / 4e-27 Protein of unknown function (DUF506) (.1) AT2G38820 107 / 8e-27 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G22970 104 / 2e-26 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G39650 98 / 2e-23 Protein of unknown function (DUF506) (.1) AT3G54550 97 / 4e-23 Protein of unknown function (DUF506) (.1) AT1G12030 96 / 1e-22 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017723 [exp] 498 / 7e-180 AT4G32480 271 / 2e-90 Protein of unknown function (DUF506) (.1) Lus10039838 [exp] 325 / 2e-111 AT4G32480 265 / 3e-88 Protein of unknown function (DUF506) (.1) Lus10011174 [exp] 239 / 1e-77 AT4G32480 268 / 2e-89 Protein of unknown function (DUF506) (.1) Lus10015437 [exp] 236 / 2e-76 AT4G32480 260 / 6e-86 Protein of unknown function (DUF506) (.1) Lus10041046 [exp] 132 / 1e-36 AT4G32480 172 / 6e-52 Protein of unknown function (DUF506) (.1) Lus10018603 [exp] 127 / 1e-35 AT4G32480 106 / 5e-28 Protein of unknown function (DUF506) (.1) Lus10006177 [exp] 129 / 3e-35 AT4G32480 171 / 1e-51 Protein of unknown function (DUF506) (.1) Lus10003174 [exp] 109 / 8e-28 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10024840 [exp] 109 / 4e-27 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G129900 [exp] 295 / 5e-100 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1) Potri.019G099600 [exp] 294 / 2e-99 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.004G044300 [exp] 258 / 3e-85 AT4G32480 260 / 3e-86 Protein of unknown function (DUF506) (.1) Potri.011G053300 [exp] 244 / 6e-80 AT4G32480 253 / 3e-83 Protein of unknown function (DUF506) (.1) Potri.019G074400 [exp] 143 / 5e-41 AT4G32480 179 / 3e-55 Protein of unknown function (DUF506) (.1) Potri.013G100500 [exp] 134 / 2e-37 AT4G32480 172 / 4e-52 Protein of unknown function (DUF506) (.1) Potri.004G184700 [exp] 124 / 2e-33 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.002G071500 [exp] 120 / 1e-32 AT1G77160 155 / 2e-46 Protein of unknown function (DUF506) (.1) Potri.005G188100 [exp] 118 / 7e-32 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1) Potri.007G109700 [exp] 114 / 7e-30 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10033683 pacid=23143328 polypeptide=Lus10033683 locus=Lus10033683.g ID=Lus10033683.BGIv1.0 annot-version=v1.0 ATGGAACAACCCTACTCTCTCTACCGTTGGAACTCCTCCTCCTCCTCCTCCTCCAGCAGCTTCTCCGACGAATCCGCCAGCTTCTCCGACATCGTCTTCG GGCTCTTTGACGAACCCGGTCAGGAATCCCCCAAGAGCTCTTGCAGTAGCAGCAGCTCCAATGATTTCCCTGACGACGACGAGGAGGAGAACTCCGGCGA TCAGGAAGAGAAGAAGAAGTTCTGGGAAATCCAGAACGATCTCCTTCGGGCGACATTATACAGAACATCCACTCTGGAAACAAAGATTCGGCAGGATACT AAAGAGGCTCTGATCGAAATTGAAAAGATCGGTTTGAACTGCGTTTGCTCAGAATCTGACGTCAGCTGCCGGAATTGCCTCCGGAGAGAAGTGTCCGTCC GGCTACAGAGTCAAGGTCACAATTGCGCCATTTGTAAATCCAAGTGGAAGTCCTCCGGCAACGACATCTTACCTGGGGAACACAGTTACTTGGAAGTGGT GGAGGATTCGAAGAGAGGGGAAGTGAGGGTAATAATCGAGCTGAATTTCAAGGCGGAATTCACGATGGCGAGGGCGAGCCAAGACTACAACCAGCTGATC GGCCGGCTGCCGGAGGTGTTCGTCGGAAGGGTGGACAGGCTGAAGTCGTTGATCAAGATCCTCTGCTCTGCAGCCAAGGCATGTATGAAGGAGAAGAAGA TTCACTTGGCTCCGTGGAGGAAACAGAAGTACATGCAGTCGAAGTGGCTGGGGAAATGCGAGAGATTCGTGCCGGCGGCGGCTCTACCTACCGGGCAGTC TCGGCGGCGGCCGGCGAAGGCTAGAGCGTCGATGTTGACTTTTGACTTGTTGGAGACTGAAGGGATGCATTTGACTGCAGTGAAAGTTTGCTTTTGA
AA sequence Show only first row Show all	>Lus10033683 pacid=23143328 polypeptide=Lus10033683 locus=Lus10033683.g ID=Lus10033683.BGIv1.0 annot-version=v1.0 MEQPYSLYRWNSSSSSSSSSFSDESASFSDIVFGLFDEPGQESPKSSCSSSSSNDFPDDDEEENSGDQEEKKKFWEIQNDLLRATLYRTSTLETKIRQDT KEALIEIEKIGLNCVCSESDVSCRNCLRREVSVRLQSQGHNCAICKSKWKSSGNDILPGEHSYLEVVEDSKRGEVRVIIELNFKAEFTMARASQDYNQLI GRLPEVFVGRVDRLKSLIKILCSAAKACMKEKKIHLAPWRKQKYMQSKWLGKCERFVPAAALPTGQSRRRPAKARASMLTFDLLETEGMHLTAVKVCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32480			Protein of unknown function (D...		Lus10033683 [exp]	0	1
AT5G27510			Protein kinase superfamily pro...		Lus10034216 [exp]	1.0	0.9528
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	7.3	0.9460
					Lus10018816 [exp]	15.3	0.9307
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	16.4	0.9310
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10029180 [exp]	18.7	0.8805
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	21.1	0.9345
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039830 [exp]	23.4	0.9209
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	26.2	0.9311
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	28.9	0.9298
AT5G46060			Protein of unknown function, D...		Lus10013943 [exp]	32.5	0.9168

Compare expression of checked genes

Lus10033683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.