Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 655 / 0 Protein kinase superfamily protein (.1) AT1G03740 610 / 0 Protein kinase superfamily protein (.1.2) AT5G44290 603 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G54610 553 / 0 Protein kinase superfamily protein (.1.2.3) AT1G09600 549 / 0 Protein kinase superfamily protein (.1) AT1G71530 547 / 0 Protein kinase superfamily protein (.1.2) AT1G74330 539 / 0 Protein kinase superfamily protein (.1.2) AT5G50860 535 / 0 Protein kinase superfamily protein (.1) AT1G18670 534 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G57700 523 / 1e-177 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031651 [exp] 1269 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10018601 [exp] 923 / 0 AT1G53050 651 / 0.0 Protein kinase superfamily protein (.1) Lus10039836 [exp] 899 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 674 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 624 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 582 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 569 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 558 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 555 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130000 [exp] 855 / 0 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 708 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 707 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 587 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 570 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 567 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 567 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 566 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 557 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 535 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033684 pacid=23143424 polypeptide=Lus10033684 locus=Lus10033684.g ID=Lus10033684.BGIv1.0 annot-version=v1.0 ATGGGGTGTATTGCTTCAAAAGAAGGGAGCCCCAGGGAGATTCTGTCGTCTCGAAGGGGAGTGTCGTTCGATAGGCGAGTTGCTCATGTTAATAATTCGG GGAGGGAGGAAGGGAGTCGATCGAGGAGTGTATCGGACAATGGAGATGTTAAGGTTATGCTGATTGAGAAGAGATCAAACAATCATGGTTCTAGTAGGCA TCATCATAGTGGTCAGCTGATGATGGATGTAAGGCCCAAGGACTATCGAGTTGAGAAGAAGTCGGTCGAGAGACGCGAGGTTGTTCCACCAGCTGCTGTT CCTGCTGCTGTATCCAATTATTCCAGGAGTGAGAGAAGGTCTGAGATAACTGATTTCAGTGATCCGGCTTGGGGGAGGGTGCCGAAGAGTTTGGAAGCGG AGCAGGTTGCAGCAGGATGGCCTGCTTGGTTTGTCTCGGTCGCTGGTGAATCGATCAAAGGATGGGTGCCGAGAAAGGCTAATACTTTCGAGAAATTGGA TAGAATTGGCCAAGGAACCTATAGCAGTGTCTACAAGGCTCGTGATGTCACACACAATAAGATTGTTGCTCTTAAGAAAGTTCGATTTGATAATAGCGAT CCGGATAGTGTCAAATTTATGGCACGCGAAATACTTATTCTGCGCAAGCTGGATCATCCTAATGTTATAAAGTTAGAAGGGCTGATAACATCACAAACCT CTTCAACTTTGTACCTTATTTTCGAGTATATGGAACATGACCTGACAGGACTTGCCTCTATACCGGGACTCAAGTTCACCGAACCTCAGATCAAATGCTA CATGAAGCAACTTTTAAGTGGACTTGAGCATTGTCATAGTCGCGGAGTTCTGCATCGTGACATCAAGGGTTCGAATCTTCTAATTGATGACAATGGGGTC CTGAAAATTGCTGATTTTGGCTTGGCGAGTTTCTTTGATCCTAAAAGTAGTGCAACATTGACCAGCCGTGTTGTGACTCTTTGGTATAGAGCCCCGGAAC TTTTACTTGGGGCTTGTAACTATGGAGTTTCTGTGGATTTATGGAGCACTGGCTGCATACTAGGTGAACTATATTCCGGAAATCCTATCTTACCTGGAAG GACAGAGGTTGAACAACTGCATAAAATCTTCAAGCTATGTGGTTCTCCATCTGAGGATTATTGGAAAAAATCGAAACTACGTCATTCATCAGTAATAAAG CCACAACGACCCTATAAACGATGTGTTGGAGAAACATTCAAAGACTTTCCTGCTCCTGCTCTTGGGCTTTTGGAGACCTTACTCTCCATCGATCCTGTTC AGAGAGGAAATGCAGCTTTAGTTCTGGAGAGTGAGTATTTTACAACAAGACCATTTGCTTGTGATCCTTCAAGTTTGCCCAAATATCCTCCCAGCAAAGA AATTGATGCTAAAAAGCGAGATGAAGAAGCTAGAAGACAAAGGCAAGTAGCAGCCAAGGGGAATGATCCGAATGAATCTATGCGTAACAAGGGACCTACT GGCAATGTCGACTTCTCCACAGCGCAGGCTAGTCGTCATTCCTATTCTAAAGGCGACATGTCTCACTCAAGCAAGGACAAGAATTTCTCAGGTCTCCTTG TTCATCCATCTAAGCAAACCCAACCTGGTAAGGAAGGGAGGAGGAATTACATGGAGAACCAACGTCCAAAAGTTTCACATTCCGGGCCATTAGTCCATGG AGCTGGCTGGACAAAGTCCGGTAGGGATCATGAATATACTCATGGCGCATCAACTAGAAGCAACAACCTTTCAGCAGTATCCGGTTTAGTAGCATCGAGG CCTTCACTGCCTGATGACTGCCAGGGGAAACCCAGCACTTCACAGCCAGATTCAGTAAAGCAAGTAGGTAGACTTAGCCATTCGGAGTCCCATAGAGTCG AGGATCGAATTTTTCCGAGACAAGGTGGAACAGACTCTTCGCAGGCAGGCAGTGGTCAACCGGGCGGTCGAGGCCCTGGCATGTATATCCGAGGCTCAAA AGGGAACAAGATATACGTATCCGGTCCACTGCTCGTTCCATCAAACGATGTGGACCAAATGCTCAAAGATCATGATCGTCAGATACAGGAATTTGCTCGG AGGCGAGTGGAAAAATCCAAGCTCGCAAAAGTAGGCGTTCCAGCAAGGTAA
AA sequence Show only first row Show all	>Lus10033684 pacid=23143424 polypeptide=Lus10033684 locus=Lus10033684.g ID=Lus10033684.BGIv1.0 annot-version=v1.0 MGCIASKEGSPREILSSRRGVSFDRRVAHVNNSGREEGSRSRSVSDNGDVKVMLIEKRSNNHGSSRHHHSGQLMMDVRPKDYRVEKKSVERREVVPPAAV PAAVSNYSRSERRSEITDFSDPAWGRVPKSLEAEQVAAGWPAWFVSVAGESIKGWVPRKANTFEKLDRIGQGTYSSVYKARDVTHNKIVALKKVRFDNSD PDSVKFMAREILILRKLDHPNVIKLEGLITSQTSSTLYLIFEYMEHDLTGLASIPGLKFTEPQIKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDDNGV LKIADFGLASFFDPKSSATLTSRVVTLWYRAPELLLGACNYGVSVDLWSTGCILGELYSGNPILPGRTEVEQLHKIFKLCGSPSEDYWKKSKLRHSSVIK PQRPYKRCVGETFKDFPAPALGLLETLLSIDPVQRGNAALVLESEYFTTRPFACDPSSLPKYPPSKEIDAKKRDEEARRQRQVAAKGNDPNESMRNKGPT GNVDFSTAQASRHSYSKGDMSHSSKDKNFSGLLVHPSKQTQPGKEGRRNYMENQRPKVSHSGPLVHGAGWTKSGRDHEYTHGASTRSNNLSAVSGLVASR PSLPDDCQGKPSTSQPDSVKQVGRLSHSESHRVEDRIFPRQGGTDSSQAGSGQPGGRGPGMYIRGSKGNKIYVSGPLLVPSNDVDQMLKDHDRQIQEFAR RRVEKSKLAKVGVPAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	0	1
AT2G46080			unknown protein		Lus10005122 [exp]	2.4	0.9023
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10007736 [exp]	3.5	0.8491
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	3.5	0.8828
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	3.5	0.8859
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	4.2	0.8628
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	4.5	0.8797
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10005462 [exp]	4.5	0.8540
AT2G38480			Uncharacterised protein family...		Lus10012216 [exp]	5.3	0.8635
AT4G28290			unknown protein		Lus10018592 [exp]	5.7	0.8505
AT4G13530			unknown protein		Lus10003531 [exp]	6.5	0.8637

Compare expression of checked genes

Lus10033684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.