Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16480 961 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G27610 498 / 4e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 484 / 5e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 481 / 2e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 477 / 2e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 464 / 9e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 453 / 2e-144 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 454 / 9e-144 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 447 / 3e-142 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 444 / 1e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013578 [exp] 1778 / 0 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013991 [exp] 518 / 2e-167 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 512 / 3e-165 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 508 / 5e-164 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 510 / 4e-163 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 505 / 9e-163 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 489 / 5e-158 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017082 [exp] 489 / 1e-156 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10031994 [exp] 479 / 2e-154 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G068600 [exp] 1115 / 0 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G067500 [exp] 548 / 2e-178 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 539 / 2e-175 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 518 / 2e-167 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 520 / 6e-167 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 498 / 7e-162 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 494 / 1e-159 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 493 / 1e-159 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 491 / 7e-156 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 477 / 1e-152 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033685 pacid=23143516 polypeptide=Lus10033685 locus=Lus10033685.g ID=Lus10033685.BGIv1.0 annot-version=v1.0 ATGGTGTCTCCCATGCAAACTCAGTTACAGTTGCGGACAATTACATCATGTCCGAAAGCCAAATTCCTCTCATATGCTGCCTTAGGATGGACAGAAGGTG GGGTTGTCTCTATTGCAGACCACCGAAACCCAGAGGTATCTTGCTTCCAGCAGAAGGGATTCTCTCTGATCACTAGACAAGTTACTGGCAAAGCACTGCA CGCTCTTTGCATCAAGGGGCTAATCAATCTGGGTGTCTTTTACAGCAACACGTTGATTAGTATGTACTCGAGGTTTGGTCACATTGGTGATGCTCGCTAC GTGTTCGATACAATGTGTGATAGAAACGAATCTAGCTCTGCTTTCGTCTTGGTTACTCCACCCGTGCATTTCTATGGAAGTTATGACTTGGCTGTTAGTG CCAAGCGGCTTTTCGAAGAGATGCCGGATAAAAATGTAGTGTCTTGGACAGCATTGATGGTTGCTTTTGCTGATCATGGAGATCCGAGGGAAGTGATGAA ATTGTATCAACGTATGAGGAAAGAAGGGGTGAGTTGTAACAGCAACACACTTGCGACTGTGGTTAGCTCGTGTGGATCACTTGAAGATGGACATCTCGGT CTTCAAGTTCTTGCACATATTATGAAGACTGGGCTAGAAACGGGTCCTTCTGTATCAAACTCTCTCATATCAATGTTTGGAAATAACGGGAGAGTGGAAG AGGCTACTTATGTTTTCCATTGCATGACTGAACGGGACACCATCACATGGAACTCAATTATTACAGTGAATGTACATAATGGCTTTTCTGAAGATGCGCT GAAATATTTTAATTGGATGCGTCTTGACCATGACAAGGTTAATTATACTACATTATCAGCATTGTTGTCTGGCTGCTGCTCTGTGGATAATGCACAATAT GGTCAAGGAATTCATTGCCTAGCTACTAAATTAGGGCTAGATTGTGATCTTTTTGTCTGCAACAGCCTTATAGGTATGTATACCGCAGTCGGTAAGAATG CAGAAGCAGAAAATGTCTTCCACGGCATGGGAAGCAAGGATTTGATTTCTTGGAATTCCATGATGGTCTGCTATGCCGACAATGGGAAGTGTAGAGATGC CTTGAGGGTTTTTAACCATATCCGTAATACAATGAAAGCCGTTAACTATGTTTCTTTTACAATTGCAGTTGCGGCTTGTGCTGATCCTGATTATGTTAGT GTAGGTAAAGTTATTCATGGCCTCATAATCCTGACAGGCCTGAATGAAAACTTGATAGTAGGTAACGCACTAGTAACCTTATATTGTAAGTCTGGTTTGA TGACTGAAGCAAGAAAGGTATTCCAAACAATGCCAAGGAGGGATGTAGTGGCCTGTAACGCACTCATTGGTGGTCATGCAGACAACGATCAGGTAGAAGA ATCCTTTGAAGTTTTTAAGTTTATGAGAAGAGAAGGTATGGAAGTATCCTACATCACTATCTCTAGTATTCTTGGTGCTTGCGTGACTGCTATTGATCTA TCCAAACATGGGATGGCCACCCATGCTTACATTGTTCAGACAGGCTTTGAGTCAGATGAATATGTCCACAGTTCGCTTATATCTATGTATGCCAATTGTG GTGATATTGACTCAAGTTTGCGTACCTTTGAGGGAATAGCTAATAAGAAGAATGCTGCGTGGAATACTCTTATAACAGCGAGTGTTAACCATGGCTACAT AGAAGAGGCTTTGAAACTTCTTTCAGAAATGAGACGTGCGGGAATAAGATTAGATCATTTTAGTATTTCTGAATGCCTAGCTGCTACTGCTCAGTTGGCG ATATTAGAGGAAGGCCAGCAGCTACATGGTTTGGCCATCAAACTTGGTTTGGAGTTGGACCCTTTTGTAGCAAATGCAACTATGGACATGTATGGAAAAA GTGGAGAGTTAGAGGATGTGGTAAAAATGATCTCTTTATTAACTGAAAGGTCACGATTATCATGGAATATTTTGATATCATCATTTGCCAAGCATGGGTG CTTCACGAAGGCCATTGAAACTTTTGATGAAATGCTTCGGCTCCAAGTGAAGCCAGATCATGTCACGTTTGTTTCTCTTCTTTCCGCATGCAGTCATGGC GGTCTAGTGGAAGAAGGCCTTAGGTACTACGATGTAATGACTAAGGAGTTCAATATTTTGCCTCGAATTACACATTGTGTATGCATGATCGACCTTCTTG GAAGATCGGGGAGGCTTGATGAGGCTGATACTTTTATCAAGGAAATGGCAATTCCGCCAACGGACTTTGTCTGGAGGAGTCTGTTGGCAGCTTGCAAGGT CCATGGGAATGTGCAACTCGGTAGAAAAGCTGCAGAAAATCTTATAGCCTTGGACCGGTTAGACGATTCAGCTTATGTACTTTATTCCAATGTTTGTTCA ACCAGTGGGAGATGGATGGATGCTGAGAATGTAAGGAGTCAGATGGGGTCAAACAGAGTGCAGAAGCAGCCAGCCTGCAGTTGGGTCAAGTTAAAGAACC AAGTTTGCTCATTCGGAGTTGGGGAGAAGTCACACCCACAGTCCAGAGATATATATAAGAAGCTGGATGAGATAAAGAGGATGATCAGAGAAGCCGGCTA TGTCCCAGATACTAGCTACTCTTTGCAAGACACGGATGAAGAACAGAAGGAGCACAATCTGTGGAACCACAGTGAAAGATTAGCACTTGCATTTGCCTTG ATGAACACCCCCGAGGGTTCCGCTATCAAAGTTTTCAAGAACCTTCGTGTTTGTGGGGATTGCCACTCTGTCTTCAAATTTATGGCAGCTGCTCTTGCTC TGACTACTGGTGATATGAAAGTGGATCGTGTTCCACAATCCGCTCAAGGTGGAGAATTATGCCCTCTATTTGGAATACCTTGCAAGATTATCTGCCTTGG AATTCTTGCAAGATTATCTGCCTCTTGCAAGATTATGCCCTCTATTTGGAATACCTTGCAAGATTATCTGCCTTGGAATTCTTGCAAGATTATCTGCCTT GGAGATCATGGAGATTCTGCTGCTGTATCTGTGTTGGCTGGTCTTTCTGCCGATGAAACAGTAACAGATCATATGGAAAGCATGCTTGACAATCTGTATT ACTGTACAAATGGAGAGCCATTCGAAATAGAGTACCTTGTTGATAAACACGGTCTTCAGTGGGGGATGGAGATTGATCGGGTTGGTGGAGTTGCACTCCG TCTTGGTGCATGA
AA sequence Show only first row Show all	>Lus10033685 pacid=23143516 polypeptide=Lus10033685 locus=Lus10033685.g ID=Lus10033685.BGIv1.0 annot-version=v1.0 MVSPMQTQLQLRTITSCPKAKFLSYAALGWTEGGVVSIADHRNPEVSCFQQKGFSLITRQVTGKALHALCIKGLINLGVFYSNTLISMYSRFGHIGDARY VFDTMCDRNESSSAFVLVTPPVHFYGSYDLAVSAKRLFEEMPDKNVVSWTALMVAFADHGDPREVMKLYQRMRKEGVSCNSNTLATVVSSCGSLEDGHLG LQVLAHIMKTGLETGPSVSNSLISMFGNNGRVEEATYVFHCMTERDTITWNSIITVNVHNGFSEDALKYFNWMRLDHDKVNYTTLSALLSGCCSVDNAQY GQGIHCLATKLGLDCDLFVCNSLIGMYTAVGKNAEAENVFHGMGSKDLISWNSMMVCYADNGKCRDALRVFNHIRNTMKAVNYVSFTIAVAACADPDYVS VGKVIHGLIILTGLNENLIVGNALVTLYCKSGLMTEARKVFQTMPRRDVVACNALIGGHADNDQVEESFEVFKFMRREGMEVSYITISSILGACVTAIDL SKHGMATHAYIVQTGFESDEYVHSSLISMYANCGDIDSSLRTFEGIANKKNAAWNTLITASVNHGYIEEALKLLSEMRRAGIRLDHFSISECLAATAQLA ILEEGQQLHGLAIKLGLELDPFVANATMDMYGKSGELEDVVKMISLLTERSRLSWNILISSFAKHGCFTKAIETFDEMLRLQVKPDHVTFVSLLSACSHG GLVEEGLRYYDVMTKEFNILPRITHCVCMIDLLGRSGRLDEADTFIKEMAIPPTDFVWRSLLAACKVHGNVQLGRKAAENLIALDRLDDSAYVLYSNVCS TSGRWMDAENVRSQMGSNRVQKQPACSWVKLKNQVCSFGVGEKSHPQSRDIYKKLDEIKRMIREAGYVPDTSYSLQDTDEEQKEHNLWNHSERLALAFAL MNTPEGSAIKVFKNLRVCGDCHSVFKFMAAALALTTGDMKVDRVPQSAQGGELCPLFGIPCKIICLGILARLSASCKIMPSIWNTLQDYLPWNSCKIICL GDHGDSAAVSVLAGLSADETVTDHMESMLDNLYYCTNGEPFEIEYLVDKHGLQWGMEIDRVGGVALRLGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	0	1
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	1.0	0.9298
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	1.4	0.9250
AT1G73970			unknown protein		Lus10036972 [exp]	2.8	0.8832
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	7.1	0.9030
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	8.5	0.8923
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	8.5	0.8867
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	10.5	0.8698
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	10.6	0.8849
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	11.2	0.8514
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	12.2	0.8868

Compare expression of checked genes

Lus10033685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.