Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11670 180 / 1e-53 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) AT4G00550 135 / 3e-38 DGD2 digalactosyl diacylglycerol deficient 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021273 [exp] 216 / 5e-67 AT3G11670 1127 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10013576 [exp] 215 / 2e-66 AT3G11670 546 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10004200 [exp] 201 / 6e-61 AT3G11670 984 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009820 [exp] 126 / 2e-35 AT4G00550 552 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10040927 [exp] 125 / 1e-34 AT4G00550 714 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10029404 [exp] 115 / 5e-33 AT3G11670 298 / 7e-97 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029403 [exp] 82 / 6e-19 AT3G11670 803 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070200 [exp] 191 / 2e-57 AT3G11670 1118 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G203200 [exp] 188 / 1e-56 AT3G11670 1117 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G079400 [exp] 132 / 3e-37 AT4G00550 717 / 0.0 digalactosyl diacylglycerol deficient 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10033686 pacid=23143287 polypeptide=Lus10033686 locus=Lus10033686.g ID=Lus10033686.BGIv1.0 annot-version=v1.0 ATGAACAATTGGGTTGCACGAGCATACTGCGATAAGATGGTCTGGGCTAAGGGATACAGGGAGTTGATAGATTTGCTGGATAAACAAAAGAGTGATCTTG ATGGCTTCAAGTTGGATGTATACGGAAATGGCGAGGATGCGCACCAAGTTAAGAGTTCAGCTCAATCATTGAATTTAAATCTCAATTTCCTCAAAGGAAT CGAATGCCGATGCTCATCATTCAATACAACTTACAACTTACTGAAATCCATGCTTCTCCAGAAATGGTACAAAGTCTTCATAAATCCAAGTGTCAGTGAT GTCCTATGCACAGCCACAGCTGAGGCACTAGCAATGGGGAAATTCGTCGTGTGTGCAGACCACCCATCGAACGAGTTCTTCAGATCGTTCCCTAAGTGTT TGACTTATAAAACACCCGAGGACTTTGTCGCAAATTAA
AA sequence Show only first row Show all	>Lus10033686 pacid=23143287 polypeptide=Lus10033686 locus=Lus10033686.g ID=Lus10033686.BGIv1.0 annot-version=v1.0 MNNWVARAYCDKMVWAKGYRELIDLLDKQKSDLDGFKLDVYGNGEDAHQVKSSAQSLNLNLNFLKGIECRCSSFNTTYNLLKSMLLQKWYKVFINPSVSD VLCTATAEALAMGKFVVCADHPSNEFFRSFPKCLTYKTPEDFVAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10033686 [exp]	0	1
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10016756 [exp]	1.0	0.7024
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	8.2	0.6091
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	16.0	0.5867
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	17.5	0.5867
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10023564 [exp]	18.8	0.6038
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	18.9	0.5867
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10022912 [exp]	19.7	0.5987
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	20.4	0.5845
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	21.2	0.5832
					Lus10011218 [exp]	22.8	0.5783

Compare expression of checked genes

Lus10033686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.