Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20680 644 / 0 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 617 / 0 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT5G01930 402 / 2e-137 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT5G66460 372 / 5e-126 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10900 343 / 4e-115 Glycosyl hydrolase superfamily protein (.1) AT3G10890 340 / 8e-114 Glycosyl hydrolase superfamily protein (.1) AT1G02310 332 / 6e-111 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G30540 253 / 3e-81 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031650 [exp] 891 / 0 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 759 / 0 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10018598 [exp] 747 / 0 AT2G20680 627 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10027329 [exp] 423 / 7e-146 AT2G20680 438 / 8e-152 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039032 [exp] 418 / 6e-144 AT2G20680 433 / 8e-150 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 407 / 1e-139 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 387 / 5e-132 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 381 / 3e-126 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 347 / 1e-115 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130400 [exp] 707 / 0 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 424 / 1e-145 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 393 / 8e-134 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 392 / 1e-132 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 373 / 1e-126 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 367 / 4e-124 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 356 / 4e-120 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 324 / 1e-107 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 224 / 3e-71 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 206 / 1e-62 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10033687 pacid=23143402 polypeptide=Lus10033687 locus=Lus10033687.g ID=Lus10033687.BGIv1.0 annot-version=v1.0 ATGGGAGGGAACGGCGGAGGTCTGTTCATCCCAATTCTAGGTTTTGCTTCATGTGTGGCTTTCATTTACATGTCTCTTGGTGACCTGTGGCCTGCTGCGT ATCCAGTGGAGCCTGTGTGGAGCTTTGTGCAGAGAAATGGGACTCGGTTTGTGCTTGATGGGAAGCCTTTCTATGTCAATGGGTGGAATTCCTATTGGTT GATGGACCACTCAGCTGATTTCGAGAGGAAACATAAGTCTGCTAAAATGCTGGAGGCTGGTTCTAAGATGGGTCTCACTGTGTGTAGGACTTGGGCGTTC AATGATGGTGCTCATAATGCTCTACAGCTCTCTCCTGGCAGATTTGAGGAGAATGTTTTCAGGGCTTTAGATCATGTCATTGCTGAAGCAAGAACACATA AAGTGAGGCTGATTCTCAGTTTGGTTAATAACTTGCAAGCTTACGGTGGGAAGGATCGGTATGTCAAGTGGGCATGGGAAGAAGGCATTGGTTTGAGCTC TTCCAACGATTCTTTCTTCTACGATCCATCCATCAAAAAGTACTTCAAGCATTATTTACAGACCATTCTGACAAGAAAGAACACTTTGACGGGAATCGAG TATAGAAATGATCCTACTATCTTCGCCTGGGAATTGATGAATGAACCCCGTTGCATGACCGATCCTTCTGGTGACACTATCCAAGATTGGATCGAAGAGA TGTCTGCTTTCGTGAAATCGATCGACAAGAACCATCAGCTAACAGTGGGACTCGAAGGGTTTTACGGCCCTAAAAACCCCAAAAGACTAACTGTGAATCC GGCTGATTGGGCTGCAGACCTTGGATCCGATTTCATCCACAACTCCAAGGTCCCACACATTGATTTCGCCTCTGTTCACATCTACCCTGATCACTGGGTT GCTGATCAATCGTTCGAGGACAAGCTGAAATTCGTGTCCAAGTGGATGCTCTCGCACATAGAAGACGGCCATTACGAGCTAAACAAGCCTATCCTCTTCA CCGAATTCGGATTGTCCAATCTCAACAAGGACTTCCACCCGTCTCAACGCGACCAGCTATACAAAACAGTCTATGACATCATATACAAGTCTGCTAAACG AAACCGCGCAGGAGCTGGTGCCTTGATGTGGCAACTATTCATCGAAGACATGGACGAGAGCAACGATGATTTTGGCATCGTCCCTTGGGAAAGAGCATCA ACTTACAAGATCATAACCGAGCAATCGTGCAAGTTGGCAAAGCTCCACGGCAGCATAGACAACAATAACCAGAATCTGAAAGAACTGTGCTTGAGAAAAG AGTGA
AA sequence Show only first row Show all	>Lus10033687 pacid=23143402 polypeptide=Lus10033687 locus=Lus10033687.g ID=Lus10033687.BGIv1.0 annot-version=v1.0 MGGNGGGLFIPILGFASCVAFIYMSLGDLWPAAYPVEPVWSFVQRNGTRFVLDGKPFYVNGWNSYWLMDHSADFERKHKSAKMLEAGSKMGLTVCRTWAF NDGAHNALQLSPGRFEENVFRALDHVIAEARTHKVRLILSLVNNLQAYGGKDRYVKWAWEEGIGLSSSNDSFFYDPSIKKYFKHYLQTILTRKNTLTGIE YRNDPTIFAWELMNEPRCMTDPSGDTIQDWIEEMSAFVKSIDKNHQLTVGLEGFYGPKNPKRLTVNPADWAADLGSDFIHNSKVPHIDFASVHIYPDHWV ADQSFEDKLKFVSKWMLSHIEDGHYELNKPILFTEFGLSNLNKDFHPSQRDQLYKTVYDIIYKSAKRNRAGAGALMWQLFIEDMDESNDDFGIVPWERAS TYKIITEQSCKLAKLHGSIDNNNQNLKELCLRKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	0	1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	2.0	0.9876
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	2.8	0.9839
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	3.5	0.9815
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	3.9	0.9805
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	4.9	0.9797
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10037376 [exp]	5.5	0.9756
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	6.0	0.9808
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	8.4	0.9804
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	8.5	0.9804
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	11.0	0.9695

Compare expression of checked genes

Lus10033687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.