Plant FIBer expression Database

Lus10033688 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28310 125 / 3e-36 unknown protein
AT1G52270 57 / 2e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031649
[exp]
294 / 1e-102 AT4G28310 149 / 2e-45 unknown protein
Lus10018597
[exp]
171 / 3e-54 AT4G28310 154 / 2e-47 unknown protein
Lus10039832
[exp]
166 / 4e-52 AT4G28310 156 / 2e-48 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G130700
[exp]
162 / 3e-50 AT4G28310 120 / 9e-34 unknown protein
PFAM info
Representative CDS sequence
>Lus10033688 pacid=23143308 polypeptide=Lus10033688 locus=Lus10033688.g ID=Lus10033688.BGIv1.0 annot-version=v1.0
ATGGTGGTGTCACTCGGTCCAGGAAAGTTCTACGGCAGCAGCCTCCCTCGTCCGCGCTTCTACACCGATGTAACGTTCAACACCGAACGCGTCGACCCGC
CGGTATCCGTCATGGATCCTTTCCTCTCATGGGCAAGCGAGGCTCACTGGTCGATGGGCGGGTTGAACACCGAGCGCGTCAGATTCCAGGGTCGGATCGA
AGGGAACACCGATAGGCTGCGGAAGTTCCGTGAGAAGCAGACCAAATTGCTGACTGGAATCACCCCGAGGAAGTCGGCAACAGATCCGGCGGATGTGAAG
AACAAGAAGGGCCGGGCCGGTTCGATTTCTCCCCCTCCGGCTCCTAGAGTGGTGAAGAAGAGGAAGTTCATGGATCAGTTCGATGACGAGATTGAAACCT
GCGAAGAGAAAGAGCAGACGAGGAAGTGGCCCGTGAGGAAACTGGTCGGCGAGTTTGAGAAGGTGGCTGAGGAATCGAAGATGGGTTCTGCTGTTGAGGA
GTTGAAGAAGAAGGGCTCTGAAGGTAAGAAGTTGAAGAAGAGATTGTGGAAAGTTGGGGAAAATCCTATGAGTGTTAGGACTTCACCAAGGTTGGCGAAG
CAATGA
AA sequence
>Lus10033688 pacid=23143308 polypeptide=Lus10033688 locus=Lus10033688.g ID=Lus10033688.BGIv1.0 annot-version=v1.0
MVVSLGPGKFYGSSLPRPRFYTDVTFNTERVDPPVSVMDPFLSWASEAHWSMGGLNTERVRFQGRIEGNTDRLRKFREKQTKLLTGITPRKSATDPADVK
NKKGRAGSISPPPAPRVVKKRKFMDQFDDEIETCEEKEQTRKWPVRKLVGEFEKVAEESKMGSAVEELKKKGSEGKKLKKRLWKVGENPMSVRTSPRLAK
Q

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28310 unknown protein Lus10033688
[exp]
0 1
AT5G38110 SGA1, SGA01, AS... anti- silencing function 1b (.... Lus10033579
[exp]
2.4 0.8290
AT2G31810 ACT domain-containing small su... Lus10027061
[exp]
4.6 0.8008
AT4G27060 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOL... Lus10043053
[exp]
7.5 0.8136
AT5G07700 MYB ATMYB76 myb domain protein 76 (.1) Lus10019085
[exp]
8.9 0.7937
AT4G18590 Nucleic acid-binding, OB-fold-... Lus10014210
[exp]
10.7 0.8203
AT4G28310 unknown protein Lus10031649
[exp]
14.0 0.8273
AT3G06740 GATA GATA15 GATA transcription factor 15 (... Lus10037721
[exp]
15.2 0.7509
AT5G65630 GTE7 global transcription factor gr... Lus10039630
[exp]
28.4 0.8036
AT5G43250 CCAAT NF-YC13 "nuclear factor Y, subunit C13... Lus10030832
[exp]
32.4 0.8036
AT5G06430 Thioredoxin superfamily protei... Lus10021764
[exp]
37.5 0.6780

Lus10033688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.