Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03550 2709 / 0 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) AT4G04970 2414 / 0 ATGSL01, ATGSL1 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) AT2G13680 1528 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT5G13000 1523 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G31960 1477 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT1G05570 1469 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT3G59100 1417 / 0 ATGSL11 glucan synthase-like 11 (.1) AT1G06490 1417 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT3G14570 1399 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT2G36850 1394 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031648 [exp] 3392 / 0 AT4G03550 2827 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10039828 [exp] 3043 / 0 AT4G03550 2762 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10000266 [exp] 2906 / 0 AT4G03550 2613 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10030030 [exp] 2348 / 0 AT4G03550 2251 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10039199 [exp] 1492 / 0 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10003920 [exp] 1481 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10020893 [exp] 1459 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10037469 [exp] 1419 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10032463 [exp] 1400 / 0 AT3G07160 3063 / 0.0 glucan synthase-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G131300 [exp] 2952 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Potri.011G052400 [exp] 2532 / 0 AT4G04970 2583 / 0.0 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) Potri.005G058300 [exp] 1526 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G012200 [exp] 1525 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 1513 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G230000 [exp] 1498 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G203500 [exp] 1424 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 1419 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.015G089300 [exp] 1405 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.011G095100 [exp] 1392 / 0 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence Show only first row Show all	>Lus10033689 pacid=23143345 polypeptide=Lus10033689 locus=Lus10033689.g ID=Lus10033689.BGIv1.0 annot-version=v1.0 ATGTCAGCCATCCGGTACCGAGCTACTCCACCTGGCCGGCCACGGCCCAACCACCAGTCTCCCGAGGAAGATGAGGAGCCTTTCAATATAATCCCAGTCC ACAACCTCTTAGCAGATCATCCATCCCTCCGCTATCCCGAGGTCCGCGCCGCCGCTGCCGCCTTACGAGCCGTCGGGAACCTCCGCCGTCCGCCCTACGT CCAATGGCATCCTTCCATGGACCTCCTGGACTGGCTGGCCCTCTTCTTCGGGTTCCAGCGCGACAGCGTCCGGAATCAGAGGGAGCATCTAGTGCTGCAC TTGGCTAACGCGCAGATGCGACTCACTCCGCCGCCGGACAACATCGACTCACTCGACCCCGGGGTTCTGCGGCGGTTCAGACGGAAATTGCTGAAGAACT ACACTAGCTGGTGCTCATACCTCAACAAGAAATCCAACATCTGGATCTCTGATCGGTCGAACCCAGATGTGCGGCGCGAGCTACTATATGTGTCTCTTTA CCTTCTGATTTGGGGCGAATCGGCCAATTTGCGGTTTATGCCGGAGTGTATTTGCTTCATTTTTCACAACATGGCGATGGAATTGAACAAGATACTAGAG GATTATATGGATGAGAACACTGGACAGCCTATTATGCCGTCGTTCTCCGGCGAGAACGCGTTTTTGAACTCTGTTGTGAAGCCGATTTACGAGACGGTGA AGGCCGAGGTGGAGAATAGTAAGAATGGGACCGCGCCTCACACGTCGTGGAGGAACTACGATGATATCAATGAGTACTTTTGGAGCAGGAGGTGCTTTGA GAAGCTGAAGTGGCCGATTGATTTGGGGAGCAATTTCTTTGTGATCGATAGTAGGCAGAAGCATGTGGGGAAGACGGGGTTTGTAGAGCAGAGGTCATTC TTGAACTTGTTTAGAAGCTTCGACAGGTTGTTTGTAATGTTGATCTTGTTCCTACAGGCTGCCATAATCGTGGCTTGGGCAGAAAAGGGGTATCCATGGC AGGCATTGGAAAGTAGGGAGGTTCAAGTTCGAGTTTTGACCGTTTTCTTCACTTGGGCTGGGTTGAGGTTCATACAGTCGTTGCTTGATATCATAATGCA GCGTAGGTTGGTTTCTCGAGAGACTATGTGGCTCGGGGTTAGGATGGTGGCGAAAGCTGTTGTTGCTGCTGGTTGGATTCTTGTATTTTCGGTGTTCTAT GCAAGGATTTGGAGCCAACAAGATCGAGATAGGGGATGGTCTGGTGCAGCGAATAGGAGGGTAGTGACTTTCCTTGAGGTGGCTGGAGTGTTTGTGCTGC CTGAGATATTGGCAACTGTTCTGTTTATAATTCCTTGGGTTAGGAACTTCCTTGAGAATACGAATTGGAGGATCTTTTACTTGTTGTCGTGGTGGTTCCA GAGCAGGAGCTTTGTTGGCCGTGGACTGAGGGAAGGGCTAGTTGACAACATCAAGTACAGCTTGTTCTGGATTCTGGTGCTGGCTACAAAGTTCACTTTC AGCTATTTTCTACAGATTAAACCGATGGTTAGGCCATCCAAACTAATGCTGGATCTCAAGGATGTCACCTATGAATGGCATGAGTTCTTCAATAACAGCA ACAGATTTGCAGTGGGATTACTGTGGCTGCCAGTTGTATTAATCTATCTTATGGATCTTCAGATTTGGTACTCTATCTATTCCTCTTTCGTAGGGGCGGC GGTTGGGCTGTTTGCTCATTTGGGTGAGATTCGGAACCTTCCTCAGTTGAGGTTGAGGTTTCAGTTCTTTGCGAGTGCTATCCAATTTAATCTGATGCCC GAAGAGCAGCTGCTGAATGCTAGGGGGACTCTGAAGAGCAAATTTAAAGATTCCATTCATCGCTTAAAGTTGAGATATGGGCTTGGTCGGCCTTATAAGA AGCTGGAATCCAATCAGGTTGAAGCAAACAAGTTTGCTTTAGTATGGAATGAGATTATTATGATTTTCAGGGAAGAGGATATCATCTCGGATCGAGAGGT TGAATTGCTGGAGTTGCCTCAGAATTCTTGGAATGTACAGGTTATTCGCTGGCCTTGCTTCCTCCTTTGCAATGAGTTGTTACTTGCCCTTAGCCAGGCA AAAGAACTGGTGGATGCTCCTGACAAGTGGCTGTGGTACAAGATATGTAAGAATGAGTACAGGCGCTGTGCTGTTATAGAAGCTTATGACAGTATCAAGC ACTTGCTACTTGAAATCATCAAGGTCAACACTGAAGAACATTCGATTGTGACTATTCTGTTCCAAGAAATTGACCACTCGCTGCAGATTGAAAAATTCAC CAAGACTTTCAAGATGACTGCACTGCCTAATTTCCACGTGAAGTTGATAAAACTTCTTGATCTGTTGATGAAACCAACCAAGGATGTGAATCAGGTTGTG AACACTCTGCAGGCACTCTATGAGATTGCTGTACGAGACTTCTTCAGAGAAAAGAGAACTGTTGAACAGCTGAAGGAGGATGGATTAGTTCCTCATGATC CTGCTGCCATGGCTGGGCATCTCTTTGAGAATGCAGTCGAACTTCCAGGTCCTGCTCAGGAGACTTTCTACAGGAATGTAAGGCGTTTGCACACTATCCT TACCTCCAGAGATTCAATGCACACGGTCCCGAAAAATCTGGAGGCCAGGCGTAGAATTGCCTTTTTCAGCAACTCCCTATTCATGAACATGCCGCATGCT CCCCAAGTTGAGAAAATGATGGCCTTTAGTGTACTGACCCCATACTACAGCGAGGACGTAATATACAGTAGAGAACAACTCCGCACTGAGAATGAGGATG GGATTGCCACTCTGTACTACTTGCAAACTATCTATGATGATGAGTGGAAGAATTTTATTGAGAGGATGCGCCGAGAAGGAATGTTGAAAACTGATGAGAT ATGGACGACCAAGTTGAGAGACCTCAGGCTCTGGGCATCTTACAGAGGACAAACACTTTCCCGTACTGTGAGAGGAATGATGTACTATTATCGGGCGCTG AAGATGCTTGCTTTTCTTGATTCGGCCTCGGAGTTGGACATCAGGGAAGGTGCAAGGGAACTTGGTTCGATGCGAAGAGATTCAGGCCTGAATGGACAGG GTTCTGAAAGGTTTTCTTCTTCCCGACGCTTGAGCAGAAATAGCAGTTCAGTGAGTTTGTTGTTTAAGGGTCACGAGTATGGGACGGCTATGATGAAGTT TACATATGTGGTTGCCTGTCAGATATATGGTACTCAGAAGGCTAAGAAGGATCCTCATGCGGAGGAAATTCTGTACTTGATGAAAAACAACGACGCTCTC CGTGTAGCTTATGTTGATGAGAAAACTACAGGAAGAGATGTCACAGAATATTTCTCTGTGCTTGTCAAGTATGATGCTGAGTTGGAGAGAGAGGTGGAGA TCTATAGGGTGAAACTTCCTGGGGCTCTGAAGCTTGGAGAAGGAAAGCCTGAGAATCAGAATCATGCTCTTATCTTCACCCGTGGCGATGCATTGCAGAC CATTGACATGAACCAGGATAATTATTTCGAAGAGGCTCTCAAGATGCGGAATCTCTTGGAAGAATACAAGCAATATTATGGTATCAGGAAGCCTACCATC TTGGGAGTCAGGGAACATATCTTTACTGGGTCCGTATCATCACTGGCGTGGTTCATGTCTGCACAGGAGACAAGTTTTGTTACTTTGGGACAGCGTGTCT TGGCAAATCCTCTGAAAGTCAGAATGCACTATGGCCACCCTGATGTGTTCGATAGATTCTGGTTTATGACTCGCGGTGGCCTCAGTAAAGCTTCCAGGGT CATTAACATTAGTGAGGACATATTTGCTGGCTTCAATTGCACGTTGCGAGGTGGAAACATCACCCATCATGAATACATCCAGGTAGGAAAAGGAAGAGAT GTCGGTCTTAATCAAATATCCATGTTCGAAGCCAAGGTTGCCAGTGGGAATGGGGAGCAAATTCTGAGCAGAGATGTCTACAGATTGGGACACAGGTTGG ATTTCTTCAGGATGCTCTCATTCTTTTACACGACCGTGGGATTCTTCTTCAACACCATGATGGTGATCCTGACTGTGTATGCATTCTTATGGGGGCGACT GTATCTGGCTCTCAGTGGCGTTGAGGGTTCTGCTTTGGCAGATGCCAGTAACAATAGAGCTCTCGGTGCCATTTTGAATCAGCAGTTTATAATCCAGCTC GGTCTATTCACTGCGCTCCCAATGATTGTAGAGAACTCGCTTGAGCATGGATTTCTCCAAGCTATTTGGGATTTCTTGACAATGCAGCTCCAGCTATCAT CTGTGTTCTACACATTCTCCATGGGAACTCGCTCCCATTACTTTGGCCGCACGATTCTCCATGGTGGGGCAAAGTATCGAGCGACTGGACGGGGTTTTGT CGTGCAGCACAAGAGCTTTGCTGAGAATTACAGACTCTATGCTCGTAGCCATTTCGTCAAGGCGATAGAACTCGGTTTGATCCTCATTGTTTACGCAACC CACAGTCCGGTTGCCAAGGCTACATTTGTGTACATAGCACTCACCATCTCCAGTTGGTTCTTGGTAATGTCGTGGATAATGGCTCCGTTTGTATTCAATC CATCTGGGTTCGACTGGTTGAAGACTGTGTATGATTTCGACGATTTCATGAACTGGATCTGGTACAGAGGAAGTGTGTTTGCAAAAGCTGAACAGAGCTG GGAAAAATGGTGGGAAGAGGAGCAGGATCATCTCAGAACCACCGGGCTCCTAGGCAAGTTAGTCGAGATGGTCTTGGACCTCAGATTCTTCTTTTTCCAG TTCGGGATCGTCTACCAAATGGGCATTGCAGCTAAAAGCACCAGCATTTTTGTCTATCTCCTCTCCTGGATATACATCTTCGTCGTCGTGGCTATATTCG TGCTGATAGTGTACGCTCGTGAGAAATATGCTGCGAAGGAACACATCTACTACCGTCTCGTCCAGTTTCTTGTCATCGTACTCGCCATCCTCGTGATGAT TGCACTGCTGCAGTTCACATCTCTGAGTTTTTCCGACATCTTCACCAGTATGCTGGCGTTTATCCCCACTGGCTGGGGAATGCTGTTGATTGCCCAGGTG TTCCGGCCGTGGCTCCACTCTACCATCCTCTGGGAGCTGGTAGTCTCGGTGGCTCGTTTATACGACATTATGTTTGGAGTAATCGTAATGACCCCTGTCG CGTTCTTGTCATGGATGCCTGGGTTCCAAGCCATGCAGACTAGGATACTGTTCAACGAAGCGTTCAGTAGAGGTCTCCGAATTATGCAGATCGTCACGGG GAAGAAGTCTATGCTTTGA
AA sequence Show only first row Show all	>Lus10033689 pacid=23143345 polypeptide=Lus10033689 locus=Lus10033689.g ID=Lus10033689.BGIv1.0 annot-version=v1.0 MSAIRYRATPPGRPRPNHQSPEEDEEPFNIIPVHNLLADHPSLRYPEVRAAAAALRAVGNLRRPPYVQWHPSMDLLDWLALFFGFQRDSVRNQREHLVLH LANAQMRLTPPPDNIDSLDPGVLRRFRRKLLKNYTSWCSYLNKKSNIWISDRSNPDVRRELLYVSLYLLIWGESANLRFMPECICFIFHNMAMELNKILE DYMDENTGQPIMPSFSGENAFLNSVVKPIYETVKAEVENSKNGTAPHTSWRNYDDINEYFWSRRCFEKLKWPIDLGSNFFVIDSRQKHVGKTGFVEQRSF LNLFRSFDRLFVMLILFLQAAIIVAWAEKGYPWQALESREVQVRVLTVFFTWAGLRFIQSLLDIIMQRRLVSRETMWLGVRMVAKAVVAAGWILVFSVFY ARIWSQQDRDRGWSGAANRRVVTFLEVAGVFVLPEILATVLFIIPWVRNFLENTNWRIFYLLSWWFQSRSFVGRGLREGLVDNIKYSLFWILVLATKFTF SYFLQIKPMVRPSKLMLDLKDVTYEWHEFFNNSNRFAVGLLWLPVVLIYLMDLQIWYSIYSSFVGAAVGLFAHLGEIRNLPQLRLRFQFFASAIQFNLMP EEQLLNARGTLKSKFKDSIHRLKLRYGLGRPYKKLESNQVEANKFALVWNEIIMIFREEDIISDREVELLELPQNSWNVQVIRWPCFLLCNELLLALSQA KELVDAPDKWLWYKICKNEYRRCAVIEAYDSIKHLLLEIIKVNTEEHSIVTILFQEIDHSLQIEKFTKTFKMTALPNFHVKLIKLLDLLMKPTKDVNQVV NTLQALYEIAVRDFFREKRTVEQLKEDGLVPHDPAAMAGHLFENAVELPGPAQETFYRNVRRLHTILTSRDSMHTVPKNLEARRRIAFFSNSLFMNMPHA PQVEKMMAFSVLTPYYSEDVIYSREQLRTENEDGIATLYYLQTIYDDEWKNFIERMRREGMLKTDEIWTTKLRDLRLWASYRGQTLSRTVRGMMYYYRAL KMLAFLDSASELDIREGARELGSMRRDSGLNGQGSERFSSSRRLSRNSSSVSLLFKGHEYGTAMMKFTYVVACQIYGTQKAKKDPHAEEILYLMKNNDAL RVAYVDEKTTGRDVTEYFSVLVKYDAELEREVEIYRVKLPGALKLGEGKPENQNHALIFTRGDALQTIDMNQDNYFEEALKMRNLLEEYKQYYGIRKPTI LGVREHIFTGSVSSLAWFMSAQETSFVTLGQRVLANPLKVRMHYGHPDVFDRFWFMTRGGLSKASRVINISEDIFAGFNCTLRGGNITHHEYIQVGKGRD VGLNQISMFEAKVASGNGEQILSRDVYRLGHRLDFFRMLSFFYTTVGFFFNTMMVILTVYAFLWGRLYLALSGVEGSALADASNNRALGAILNQQFIIQL GLFTALPMIVENSLEHGFLQAIWDFLTMQLQLSSVFYTFSMGTRSHYFGRTILHGGAKYRATGRGFVVQHKSFAENYRLYARSHFVKAIELGLILIVYAT HSPVAKATFVYIALTISSWFLVMSWIMAPFVFNPSGFDWLKTVYDFDDFMNWIWYRGSVFAKAEQSWEKWWEEEQDHLRTTGLLGKLVEMVLDLRFFFFQ FGIVYQMGIAAKSTSIFVYLLSWIYIFVVVAIFVLIVYAREKYAAKEHIYYRLVQFLVIVLAILVMIALLQFTSLSFSDIFTSMLAFIPTGWGMLLIAQV FRPWLHSTILWELVVSVARLYDIMFGVIVMTPVAFLSWMPGFQAMQTRILFNEAFSRGLRIMQIVTGKKSML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10033689 [exp]	0	1
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10031648 [exp]	2.0	0.9459
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10005090 [exp]	7.9	0.9425
AT2G21390			Coatomer, alpha subunit (.1)		Lus10035884 [exp]	7.9	0.9422
AT3G50370			unknown protein		Lus10019351 [exp]	10.8	0.9315
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007932 [exp]	11.2	0.9154
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016374 [exp]	12.8	0.9390
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022666 [exp]	13.4	0.9245
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10006586 [exp]	15.4	0.9255
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	15.8	0.9110
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10034360 [exp]	16.2	0.9409

Compare expression of checked genes

Lus10033689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.