Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32490 1228 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 1192 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT3G26560 664 / 0 ATP-dependent RNA helicase, putative (.1) AT4G16680 652 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G13010 592 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G62310 588 / 0 RNA helicase family protein (.1) AT2G47250 584 / 0 RNA helicase family protein (.1) AT4G18465 519 / 1e-168 RNA helicase family protein (.1) AT1G26370 476 / 5e-152 RID1 RNA helicase family protein (.1) AT1G27900 452 / 3e-143 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031647 [exp] 1490 / 0 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10036783 [exp] 665 / 0 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 623 / 0 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10005261 [exp] 569 / 0 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10037067 [exp] 484 / 5e-155 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 456 / 1e-144 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 456 / 2e-144 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 446 / 7e-141 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10009600 [exp] 388 / 6e-122 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G008700 [exp] 1305 / 0 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.015G024400 [exp] 666 / 0 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 663 / 0 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.010G172500 [exp] 592 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.014G117900 [exp] 585 / 0 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 581 / 0 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 514 / 7e-167 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 482 / 3e-154 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 449 / 4e-142 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 305 / 1e-84 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0021 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10033690 pacid=23143475 polypeptide=Lus10033690 locus=Lus10033690.g ID=Lus10033690.BGIv1.0 annot-version=v1.0 ATGGGTGATGCGAATTTGAAGACATGGGTGTCTGATAAGCTCATATCTATATTGGGATACTCTCAAGGCGCAATTGTTCAGTACATCATCGGACTGGCTA AAGAAGCAAAATCCTCTGCTGATATTGTTGGCAAGTTGGAAGAGTTGAACTGTCCATCGTCAGCAAAAACACGCTCATTTGCGGAAGAAATTTTTGAAAA AGTTCCGCGGAAAGCTTCTGGTTTAAATGTGGTCAAACATGTTGAAAAAGATAGGCTGGTTAAGAGACGAACTTCTAATGACAAAGATGATGATTCTGAG TCGGATGAAGAAATATTGCGTGATCAAATGGAACGTGAGCAATTGGAGCAAAATATGAGAGAACGTGATGCTGCAGCAACTAAAAAGTTGGCAGAGCGAA AAGTATCAAAGAAGGAGGAAGATGAGAGGATCCGAAGAACGACTGTTTTGGAGAACGATGGCATTGATACATTAAGAAAGTTGTCCAGACGAGAGTATCT AAAGAAGAGGGAGGAAAAGAAAGTAGAAGAACTCAGGGATGATATAATAGACGAGGATTATCTTTTTAAAGATGAGAAGCTCACTGAAGTTGAACTTCGT GAATTAAGCTACAAGAAGGCAATAGCAGAGCTTTTGAACAAGTCACGAGAAGTTGATGACACACAAGAGTATAGGATGCCAGATGCATATGATCAAGACG GTGGAGTTAACCAAGAGAAAAGATTTTCTGTTGCTGAACAGCGCTACGGAGATGGTAGTGCTGCAGAAAAAATGAACCCGTTTGCGGAGCAGGAGGCTTG GGAAGATCATCAAATTGGAAAAGCAACACTGAAATTCGGTTCAAGGAACAAAAAGCAGACGTCTGATGCTTATCAGTTTGTATTTGAGGACCAGATTGAT TTTATCAAGGAATCAGTAATGGATGGTGACAAGTTTGACAATGATCTCTCTCTAGAGGCGCTTGAGGAACTGGAGGCAAAAACTGGTTTTGAGAAGCTTC AGGCGGACAGAAAAACCTTACCCATGTATCAATATCGAGAAGAACTACTTGAAGCTATCGGAAAATATCAGGTTCTTGTTATTGTTGGAGAGACGGGTTC TGGGAAGACTACTCAGATACCCCAATATCTTCATGAAGCTGGATATACCAAGGCTGGGAAGGTTGGTTGTACTCAGCCAAGGCGAGTTGCAGCCATGAGT GTGGCGGCTAGGGTTTCTCAAGAGATGGGTGTCAAACTCGGCCATGAGGTTGGTTACTCTATCCGCTTTGAGGACTGCACATCAGACAAGACAATTATCA AGTACATGACAGATGGAATGCTGCTGCGGGAATTCCTTGGCGAACCCGATTTGGCTAGCTACAGGCAAGTGGATTCTTTTTCATTATGTGCTGTAGCAAC TGAGATTTTGTTCACCATAAACATTCTAAAAGATATATCACGTTTCCGACCAGATTTGAAGCTCCTGATCTCAAGTGCAACTCTTGATGCTGAGAAATTC AGTGATTACTTTGATGCTGCTCCGATCTTCCGGATTCCTGGTAGGAGGTATCCCGTTCATATACACTACACCAGAGCCCCAGAAGCTGATTATCTGGATG CTGCAATTGTAACTGTACTTCAGATCCACGTGACAGAAGCACCTGGTGATATATTAGTCTTCTTTACTGGCCAAGAAGAAATAGAGACGGCTGAGGAAAC TTTGAAACACAGGACAAAAGGTTTGGGGACTAAAATTCCCGAGCTCATTATTTGTCCTATATACGCCAACTTACCGACAGAGCTTCAGGCCAAGATATTT GAGCAAACCCCAGAAGGGGCTCGGAAGGTTGTCCTTGCAACAAATATAGCAGAAACATCTCTGACAATTGACGGTATCAAATATGTTATTGATCCTGGAT TTTGCAAGATGAAATCGTACAATCCAAGAACTGGAATGGAGTCCTTGCTCGTGACTCCCATATCAAAGGCTTCAGCTAATCAACGTGCTGGTCGTTCCGG TCGGACAGGTCCAGGGAAGTGCTATAGGTTGTACACTGCCTACAATTTTAATCATGACTTGGACGAAAATACGATACCTGAAATACAGAGGACTAATCTG GCTAGTGTTGTGCTGTCCTTGAAGAGTCTTGGAATCCACGATTTGTTAAATTTTGATTTTATGGATCCACCACCTTCCGAGGCTTTATTAAAGGCGTTGG AGCTGCTCTTTGCTCTAAGTGCTTTGAACAAACATGGTGAACTGACAAAGGTCGGTAGGAGGATGGCCGAGTTTCCTCTTGATCCTATGTTGTCCAAGAT GATAGTTGCTTCCGACAAGTACAAATGCTCAGATGAGATAATCTCTATTGCTGCTATGTTGTCAGTTGGGAATTCGATCTTTTATCGCCCAAAGGACAAA CAAGTTCATGCTGACAATGCCCGATTGAATTTCCACACAGGAAATGTAGGAGACCACATTGCTCTGCTCAAGGTATATAACTCCTGGAAAGAAACAAATT TCTCTACACAATGGTGTTACGAAAATTACATTCAGGTTAGAAGTATGAAACGAGCTAGAGACATAAGAGATCAATTGGAAGGCCTTTTAGAGAGGGTAGA AATCGATATTACTGCCTGTCCCAATGATTTGGATGCAATTAAGAAGTCAATAACATCAGGTTTCTTTCCCCATTCTGCAAAGCTGCAAAAGAGTGGTGCT TATAAAACCGTGAAGCACCCTCAGACTGTTCATATTCATCCAAGCTCAGGGTTGGCTCAGGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTATTTTTTTAG
AA sequence Show only first row Show all	>Lus10033690 pacid=23143475 polypeptide=Lus10033690 locus=Lus10033690.g ID=Lus10033690.BGIv1.0 annot-version=v1.0 MGDANLKTWVSDKLISILGYSQGAIVQYIIGLAKEAKSSADIVGKLEELNCPSSAKTRSFAEEIFEKVPRKASGLNVVKHVEKDRLVKRRTSNDKDDDSE SDEEILRDQMEREQLEQNMRERDAAATKKLAERKVSKKEEDERIRRTTVLENDGIDTLRKLSRREYLKKREEKKVEELRDDIIDEDYLFKDEKLTEVELR ELSYKKAIAELLNKSREVDDTQEYRMPDAYDQDGGVNQEKRFSVAEQRYGDGSAAEKMNPFAEQEAWEDHQIGKATLKFGSRNKKQTSDAYQFVFEDQID FIKESVMDGDKFDNDLSLEALEELEAKTGFEKLQADRKTLPMYQYREELLEAIGKYQVLVIVGETGSGKTTQIPQYLHEAGYTKAGKVGCTQPRRVAAMS VAARVSQEMGVKLGHEVGYSIRFEDCTSDKTIIKYMTDGMLLREFLGEPDLASYRQVDSFSLCAVATEILFTINILKDISRFRPDLKLLISSATLDAEKF SDYFDAAPIFRIPGRRYPVHIHYTRAPEADYLDAAIVTVLQIHVTEAPGDILVFFTGQEEIETAEETLKHRTKGLGTKIPELIICPIYANLPTELQAKIF EQTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCYRLYTAYNFNHDLDENTIPEIQRTNL ASVVLSLKSLGIHDLLNFDFMDPPPSEALLKALELLFALSALNKHGELTKVGRRMAEFPLDPMLSKMIVASDKYKCSDEIISIAAMLSVGNSIFYRPKDK QVHADNARLNFHTGNVGDHIALLKVYNSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDITACPNDLDAIKKSITSGFFPHSAKLQKSGA YKTVKHPQTVHIHPSSGLAQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXFLFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	0	1
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	1.0	0.9377
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	2.8	0.9269
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10020893 [exp]	3.7	0.9019
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	4.2	0.9202
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	4.5	0.9185
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10000040 [exp]	4.6	0.8777
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	5.5	0.9185
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	6.5	0.8847
AT2G46200			unknown protein		Lus10000549 [exp]	8.1	0.8867
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	8.5	0.8867

Compare expression of checked genes

Lus10033690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.