Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55870 706 / 0 ATPARN, AHG2 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G25430 217 / 8e-62 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031646 [exp] 1140 / 0 AT1G55870 637 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10009563 [exp] 216 / 1e-61 AT3G25430 578 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10020388 [exp] 207 / 2e-58 AT3G25430 565 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10002539 [exp] 54 / 1e-08 AT3G25430 87 / 9e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368401 [exp] 767 / 0 AT1G55870 685 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Potri.014G018500 [exp] 215 / 2e-61 AT3G25430 662 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.014G177400 [exp] 214 / 7e-61 AT3G25430 667 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10033691 pacid=23143397 polypeptide=Lus10033691 locus=Lus10033691.g ID=Lus10033691.BGIv1.0 annot-version=v1.0 ATGAGCAAGAAACAATGGCTGCCTCGGTTATGGCGTCCCTTCTCACGCGCCTATTCCTCCTCGCCCACCACGTCTTCGTTCCCTCTAAAGCATGTCACCA AGTCCAACTTCGAATCCTCGCTCGCCGAGCTCAGAACTCACGTCCGCGCCGCCGATTTCGTAGCCATCGATTTGGAGATGACCGGCGTGACCAGCTCCGC CTGGAGGGAATCCTTCGAGCTCGACCGCTCCGATGTTAGATACCTCAAGGTCAAAGATTCCGCCGACAAGTTCGCCGTCGTTCAGTTCGGCGTTTCCCCC TTCCGTTGGGACCCTCAACGGGAATCCTTCGTTGCTCACCCGTATAATTTCTTCATATTCCCTCGCGAAGAGATTCAGTCTGCTGGCCCTTCCCATGAGT TCCTCTGCCAGACATCGTCGCTGGATTTCCTGGCCAAGTATCAGTTTGATTTCAATACCTGTATTCGTGAAGGGATATCTTATTTATCCAGAGGACAAGA AGATGAAGCATTGCGTCGCTTGACTCAGCAATACGAGAGGTTATCAGACTTCTCCAACAGCTTGGAAGATAGAGACGTGCCGTTGATCAACTTCACAGAT GTTCTCTTCAGTGAGCGAATGAAGAACAAATTGTGTGGTTGGCGTACCGGGTTGTTGCAGGGCACAAATGTTGCTTCTGATTACCAAGATTCATCGAAAG ATTCTAAAGAGCAGTTTCAGACTGTCTTCTTCAAGCTTCGTCCGGCTGTTTCTCTCAGTGGTTTCACCTCCCACCAGCTTAATTTGATTCGGATGGTCAC GAAGAAACATTTCAAAGATCTTGTTCATGTCCGCATCAGTAGGGAAAACTCATGTTCAGAACAACTGGTCGTCTATACAGACACAGAGAATGATAAAGCC TTATTACTGACAGAGGTGAAGAAGGCGTATCTTGGAGAGGCAGAGAAGAAGATCAAAGCTGCAACCGGGTTCCGCCATGTGATAGACCTTCTTTCTTCTG AGAAGAAGTTAATCGTCGGCCACAATTGCTTCTTGGATATTGCACATGTACACAAAAAGTTCTTGGGTCCTCTCCCTGGCACAGCTGAAGAATTTGTTTC GTCGTTCAACAAGCATTTCCCATACATAGTTGATACCAAGATTCTTTTGAATTCGAGCGGCGTACTGCAAAGAATAATGAACAAGTCGAGCACCTCGCTC TCCAAAGCATATCTTTTACTTTGTAAGCAGATTACGTTGGGCGCTGACAAAGCATCTGACAACTTGGGTTATTGTCCAAGTGTCAAAATCGAAGTTGAAA TGGATGAGATAAGGTCGACAGACTGGAAATCGGGAGCGAAACACGAAGCTGGATATGATGCCTTTATGACGGGATGCGTATTTGCTCAGTCCTGCAATTA TCTCGGCGTTGATTTCAAGCAACATTCGCCTCCCCTGAACTTAGCTCTCGATCAAAAACTCGAAAAACACATCAACCACCTGTACTTGAGTTGGAATAAC GGAGACATTGTAGATTTAAGCACAGGAAAACAGATTCTGGCTGTTGGCCTTGGAGCCAAGGGTCTGAGTAGACGATTCTCGAAGATAGAGTTCGAGAATG TGGTTCTGATCTGGCAGTTCCCAACTAAACTCAAGGTAAAGGAGATAAAGGAGTGTATATGCAAAGTCTTTGGTGTAGCCTCCGTCGCATCAATCTTTCA GGTGGATGAAAGTGCAGTTCTTGTTCATTTCAACAACCCAGAGTTGGTTTCCGAGTTTCTACTTCTGAAAGAAACATTGGAAAAGAGCGACGATGCCTTG TCAGCTCTGAATCCTCTGACGAGTCTTCTGGAAGGCGGGAGGACTCGCGCAGCTGGTTATCAAACATATAAGGAGATATGTAGGTCACCGGGTTCTCAAG TTCTTCTTGCAGATGCAGCTGATGATGCCATGTCCCGGAACCTTGACCTGTAG
AA sequence Show only first row Show all	>Lus10033691 pacid=23143397 polypeptide=Lus10033691 locus=Lus10033691.g ID=Lus10033691.BGIv1.0 annot-version=v1.0 MSKKQWLPRLWRPFSRAYSSSPTTSSFPLKHVTKSNFESSLAELRTHVRAADFVAIDLEMTGVTSSAWRESFELDRSDVRYLKVKDSADKFAVVQFGVSP FRWDPQRESFVAHPYNFFIFPREEIQSAGPSHEFLCQTSSLDFLAKYQFDFNTCIREGISYLSRGQEDEALRRLTQQYERLSDFSNSLEDRDVPLINFTD VLFSERMKNKLCGWRTGLLQGTNVASDYQDSSKDSKEQFQTVFFKLRPAVSLSGFTSHQLNLIRMVTKKHFKDLVHVRISRENSCSEQLVVYTDTENDKA LLLTEVKKAYLGEAEKKIKAATGFRHVIDLLSSEKKLIVGHNCFLDIAHVHKKFLGPLPGTAEEFVSSFNKHFPYIVDTKILLNSSGVLQRIMNKSSTSL SKAYLLLCKQITLGADKASDNLGYCPSVKIEVEMDEIRSTDWKSGAKHEAGYDAFMTGCVFAQSCNYLGVDFKQHSPPLNLALDQKLEKHINHLYLSWNN GDIVDLSTGKQILAVGLGAKGLSRRFSKIEFENVVLIWQFPTKLKVKEIKECICKVFGVASVASIFQVDESAVLVHFNNPELVSEFLLLKETLEKSDDAL SALNPLTSLLEGGRTRAAGYQTYKEICRSPGSQVLLADAADDAMSRNLDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55870		ATPARN, AHG2	ARABIDOPSIS THALIANA POLY\(A\)...		Lus10033691 [exp]	0	1
AT5G41190			unknown protein		Lus10001487 [exp]	8.2	0.9307
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10031816 [exp]	9.0	0.9109
AT1G24310			unknown protein		Lus10015795 [exp]	12.0	0.9245
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	15.8	0.9220
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10039874 [exp]	16.7	0.9211
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	20.7	0.9166
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	20.9	0.9190
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	21.8	0.9178
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019208 [exp]	21.9	0.9109
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	27.9	0.8890

Compare expression of checked genes

Lus10033691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.