Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28300 223 / 9e-67 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) AT5G14540 90 / 6e-19 Protein of unknown function (DUF1421) (.1) AT3G01560 81 / 4e-16 Protein of unknown function (DUF1421) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031645 [exp] 490 / 1e-170 AT4G28300 392 / 2e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10039827 [exp] 280 / 2e-88 AT4G28300 377 / 9e-126 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10018593 [exp] 268 / 1e-83 AT4G28300 376 / 1e-125 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10032138 [exp] 90 / 9e-19 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1) Lus10014549 [exp] 89 / 1e-18 AT5G14540 207 / 2e-59 Protein of unknown function (DUF1421) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G095400 [exp] 225 / 2e-67 AT4G28300 261 / 5e-81 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.013G131600 [exp] 222 / 3e-66 AT4G28300 284 / 1e-89 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.001G348500 [exp] 82 / 3e-16 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 76 / 3e-14 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.T125008 [exp] 71 / 6e-13 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF07223 [flax] [poplar] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Lus10033692 pacid=23143380 polypeptide=Lus10033692 locus=Lus10033692.g ID=Lus10033692.BGIv1.0 annot-version=v1.0 ATGGCGTCCGGATCGTCGTCGGGCCGACCCAGCTCCGGCTCCAAGGGCTTCGATTTCGGGTCCGATGATATCCTCTGCTCCTACGACGACTTCCCCAATC AGGACTCCTCCAACGGAACTCATTCCGATCCAATCCCATCATCCACTCCCTCCAAGGGTTTTGAGAAGAGCCGGATGTCAAGATCGTCCGGGTATCAGGC TGCTTCCTATGGCCAACCTGATGATTCCTTCCACCAAGAAGTGATCTCTGTAGTGGAGAGGAGTATGAAAAGGCATTCTGATAACATGATGCGTTTCCTC GAGGGAATCAGTTCCCGCCTTTCCCAATTGGAGTTGTATTGCTACAATCTTGATAAGTCGATTGGAGAGATGCGATCTGATTTGACTCGGGACCATACTG AGACGGATACAAAGCTCAAAGCTGTGGAGAAACATCTTCAAGAGGTTCATAGATCTGTCCAGATACTAAGGGACAAGCAAGAACTTGCCGAGACTCAGAA CGAACTTGCGAAGCTTCAGCTCACGCATAAGAATTCCTCTTCATCAACGCATTCACAGTCTAACGAGGAGAAAACTGCACTGCCTGCTGCCGATCCAAAA AACAACGACAACAACAACTCCGAAGGACATAACCAGCAATTGGCTCTTGCTCTTCCACCACAACAGGTTGTACCTCAGCAGCAGCAGATCTCCGTCCCGC CACCTTCCCAAACTCCACCACAGAATGTAGCACCACCACAACCCCAACCTCAGACTTATTACTTACCGCCATCCCAGTCGCGACCCCCTCAGAGTCAATA CATGCCTCCAGATTCTCAGTACAGACCAAACCAAGTGCCGGGACAAGCAACTCAAGCACCACAGCCGTCTAGCCAGCAATATCCTCAGTACCAGCAGCAG TGGGCTCAGCAAGTTCAACTACAACAAACTCAACAGCCCACAATGCCGAGTCAAGTCAGGCCGGCGTCAAATCAAGTTTACCCTCCTCCCTACCCCCCAC CCAGTCAGCCAGCCGGTCCCCAAGAGACTTTGTCAAGCAGCATGCCTATGCCGGCATCATATTCCCCAGTTCCTCAGCCTTCATATGGGTACGGTTCCGC TAGACCTGTTCCTCAGCAGCAGCTTCCACCTCAGCCTTCATACATGGTGTACGAGGGCGAAGGAGGGAGAGCTCACCATCCAACCCAGAGTCCTCATTTT GCACAAGGCGGATACCCTCCAACAAACGTCTCTCACCAGGTGCCTAGAAATCCCGGTCAGCCCCAGTTCGCCCGCAACCATCCCTACGGTGAGTTGGTTG AGAAGCTGGTGAACATGGGATTTAGAGGGGATCATGTGATGAGTGTGATTCAGAGGATGGAAGAATCCGGGCAGCCCGTGGATTTCAATGCTGTGCTGGA CAGGTTGAATGTGCATTCCTCCGGGAGCCCGCAGAGAGGGTGGTCGGGTTAA
AA sequence Show only first row Show all	>Lus10033692 pacid=23143380 polypeptide=Lus10033692 locus=Lus10033692.g ID=Lus10033692.BGIv1.0 annot-version=v1.0 MASGSSSGRPSSGSKGFDFGSDDILCSYDDFPNQDSSNGTHSDPIPSSTPSKGFEKSRMSRSSGYQAASYGQPDDSFHQEVISVVERSMKRHSDNMMRFL EGISSRLSQLELYCYNLDKSIGEMRSDLTRDHTETDTKLKAVEKHLQEVHRSVQILRDKQELAETQNELAKLQLTHKNSSSSTHSQSNEEKTALPAADPK NNDNNNSEGHNQQLALALPPQQVVPQQQQISVPPPSQTPPQNVAPPQPQPQTYYLPPSQSRPPQSQYMPPDSQYRPNQVPGQATQAPQPSSQQYPQYQQQ WAQQVQLQQTQQPTMPSQVRPASNQVYPPPYPPPSQPAGPQETLSSSMPMPASYSPVPQPSYGYGSARPVPQQQLPPQPSYMVYEGEGGRAHHPTQSPHF AQGGYPPTNVSHQVPRNPGQPQFARNHPYGELVEKLVNMGFRGDHVMSVIQRMEESGQPVDFNAVLDRLNVHSSGSPQRGWSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28300			Protein of unknown function (D...		Lus10033692 [exp]	0	1
AT5G14540			Protein of unknown function (D...		Lus10014549 [exp]	4.6	0.8254
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	5.9	0.8557
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	8.4	0.8330
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10005157 [exp]	9.0	0.8227
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10020589 [exp]	10.8	0.7956
AT1G48780			unknown protein		Lus10009004 [exp]	13.9	0.8396
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10028595 [exp]	15.2	0.8482
AT2G22680		WAVH1	WAV3 homolog 1, Zinc finger (C...		Lus10003485 [exp]	15.7	0.7823
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10013361 [exp]	19.5	0.8169
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	20.6	0.8296

Compare expression of checked genes

Lus10033692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.