Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03510 119 / 7e-33 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G28270 112 / 7e-31 ATRMA2 RING membrane-anchor 2 (.1) AT4G27470 110 / 8e-30 ATRMA3 RING membrane-anchor 3 (.1) AT2G23780 100 / 6e-26 RING/U-box superfamily protein (.1) AT1G19310 100 / 9e-26 RING/U-box superfamily protein (.1) AT1G74990 92 / 7e-24 RING/U-box superfamily protein (.1) AT2G42030 85 / 3e-19 RING/U-box superfamily protein (.1) AT3G58030 85 / 4e-19 RING/U-box superfamily protein (.1.2.3.4) AT2G44410 73 / 6e-15 RING/U-box superfamily protein (.1) AT2G26350 50 / 4e-07 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039821 [exp] 150 / 3e-45 AT4G03510 154 / 2e-46 RING membrane-anchor 1 (.1.2) Lus10018589 [exp] 140 / 1e-41 AT4G03510 154 / 9e-47 RING membrane-anchor 1 (.1.2) Lus10010791 [exp] 103 / 7e-27 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 102 / 1e-26 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10016796 [exp] 101 / 3e-26 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10022492 [exp] 100 / 5e-26 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10011184 [exp] 100 / 1e-25 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 100 / 1e-25 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10021063 [exp] 95 / 1e-22 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G100800 [exp] 129 / 1e-36 AT4G03510 187 / 1e-58 RING membrane-anchor 1 (.1.2) Potri.013G132300 [exp] 129 / 1e-36 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.011G051800 [exp] 126 / 7e-36 AT4G27470 163 / 8e-50 RING membrane-anchor 3 (.1) Potri.004G042700 [exp] 124 / 5e-35 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.001G401600 [exp] 120 / 3e-33 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.002G133000 [exp] 102 / 9e-27 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 102 / 1e-26 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.011G120800 [exp] 102 / 3e-26 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1) Potri.005G127900 [exp] 100 / 4e-26 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 98 / 5e-25 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10033697 pacid=23143353 polypeptide=Lus10033697 locus=Lus10033697.g ID=Lus10033697.BGIv1.0 annot-version=v1.0 ATGGATGAGTTACTAATGGAGGATGAGTGCTGCCATCGTAGTAATTATAAGATTCGCGGTGGATTCGATTGTAATATCTGTCTCGATCCTGTTCAAGACC CGGTAGTCACTCTCTGCGGCCATCTCTACTGCTGGCCGTGCATTTACCGGTGGCTTCATTCCTGGACGATCGGCTCCTCCTCCGTCGCCGCCGACGAGAA GGCGGTGTTACACCGGCAGTGCCCCGTTTGCAAATCGGAAATCTCGCAATCCGCCTTGGTTCCTCTCTTCGGCCGTGGCCAGGCAAGCGACGACGCGCCG TCGAGAAGATTTGATTCCGATGTGATCCCCAGACGGCCTTCTGCGCCGGAGAGAATTAGTCGCCGGTGTCCTACTCCGCCGCCGCGGCGGTACTACGCTG GGACGGAGGGGGGTATGGGTTTGGATTTGTCGGGTCGGGTGCCGATTCCGGTGGTGGGGATGCTGGAGGAGATGATTTTCGCGGGAGGAGGGTTTGGGAA TAATGCGGCGGCGGGGACGTATAGGGTGGCCGGAGGTGGGAGGGTGCGGCGGCAAATGATAGAGGCGGATAGATCGCTGAGCAGAGTGTGTTTCTTCCTC TGCTGCTGCGTTTTCATGTGTATCCTTTTGTTCTGA
AA sequence Show only first row Show all	>Lus10033697 pacid=23143353 polypeptide=Lus10033697 locus=Lus10033697.g ID=Lus10033697.BGIv1.0 annot-version=v1.0 MDELLMEDECCHRSNYKIRGGFDCNICLDPVQDPVVTLCGHLYCWPCIYRWLHSWTIGSSSVAADEKAVLHRQCPVCKSEISQSALVPLFGRGQASDDAP SRRFDSDVIPRRPSAPERISRRCPTPPPRRYYAGTEGGMGLDLSGRVPIPVVGMLEEMIFAGGGFGNNAAAGTYRVAGGGRVRRQMIEADRSLSRVCFFL CCCVFMCILLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	0	1
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	1.0	0.9151
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	3.5	0.9084
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	4.0	0.9080
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	4.5	0.9088
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	6.3	0.8990
AT3G60520			unknown protein		Lus10028179 [exp]	7.5	0.8786
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	7.9	0.8956
AT2G01680			Ankyrin repeat family protein ...		Lus10021814 [exp]	9.2	0.8669
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	9.4	0.8879
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10024303 [exp]	10.2	0.8749

Compare expression of checked genes

Lus10033697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.