Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 322 / 2e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G60770 225 / 2e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 222 / 8e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 216 / 1e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 209 / 4e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 195 / 7e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 176 / 4e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 149 / 4e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11380 148 / 1e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01990 142 / 7e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018588 [exp] 241 / 4e-73 AT2G20710 303 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005855 [exp] 226 / 1e-67 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016229 [exp] 219 / 3e-66 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10001213 [exp] 221 / 1e-65 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 218 / 4e-64 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 216 / 7e-64 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 217 / 1e-63 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 213 / 1e-62 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 187 / 6e-54 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G132500 [exp] 400 / 3e-135 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 379 / 2e-126 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063300 [exp] 281 / 8e-89 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063400 [exp] 280 / 6e-88 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 265 / 5e-83 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G120900 [exp] 254 / 2e-78 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 250 / 3e-76 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 243 / 1e-73 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 230 / 4e-69 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G051500 [exp] 223 / 1e-66 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033698 pacid=23143528 polypeptide=Lus10033698 locus=Lus10033698.g ID=Lus10033698.BGIv1.0 annot-version=v1.0 ATGAATCAGCTCAGTCACGGCGGCGGCCAGCTCCGGCAAGCCATTTCCAAACTCTCTCGGGTAGCATCCTTCAGTTTCCACAGCAGAAGTAGAACTTCCC CTCCTGCGTTCACTTCAGCTCCACCCGACTCACTGTACAATCGTGTATGGAGGGCAGGCCACCCTTCAATCTCCGTCGTTGAAGTGATCGAGAAATGGCT CGACGAAGGCAAACAAATCAAGCAATCCGAACTCGACTCGCTCATCCGGAACCTCCGCCGCCACCGCCGCCACCGCCAAGCTCTCCAGCTGTCGGAATGG ATGAGGGATCAGAGCTGCTACAGTGATTCCCCTGGAGAGATCGCTGTCCGGTTGGATTTGATCTCGAAAGTCCGGGGATTGGAGCAAGCAGAGGAAGCTT TTGAAGCCATTCCCGAAGCTTCGAGAACCTTCCAAGTTTACGGTGCTCTTCTAAGCTGCTATGCACGGGATCTGCTTGTGGAGAAAGCAGAAGCCACCAT GACCAAAATGAGGGAGTTGAAGTTTCTGAGATCTTCCCTTCCGTATAATCTGATGCTAACACTATACCACCACACCAAGAACCACGAGAAGCTAGATGCT CTATTGAAGGAGATGGAAGAAAAGGGGGTTGCTTCCGACATCTACACGAATAACATCTTGCTGAATGCTTACGGAGCTTCTTCAAGGATCCAGGAAATGG AGTATCTTCTGAACAAGTTGGAAGGAGACACTCTCAACAAAGTGGACTGGCATAGTTACTTCGTTGTAGCTAGTTCTTATCTGAAAGCTGGAGAGAAGGA AAAGGCAAAGGCTATGCTGAAGAAGCTAGAAGGGTTAACCACTTACAAGTCTAGGAAGTTCTGTTATGAAGTTCTTATCAGCTTGTATGCCAATGCCGGG GAAATGGACCAGGTGTATCGTATGTGGGATTTGTACAAGAGCTTCGGGAAGATGTTCAACTCGGGGTATCTGTGCATGATAAGCTCGCTCGTGAAGCTGA AAAATCTCGATGGCGCCGAGAAAATATGGGAGGAATGGTTATCAAAGAAGACATTCCAGGATACTCGGATACTGAATCAGATGGTCATGGGTTTCTCGAG GAAAGGACTTTGGGAGAAGGCAGAGGAATGCGTGAACAAAGTAGCGGAGGTAGGTGGGAAACCCAATCCGATCACATGGAGCTGTTTGTCGGTAGGGTAT CGTGTCGGTGGGGAGATGGACAAGGCGGTAGAGACGGTGAAGAAAGCTGTCTCGGAACGTCGAAGTAAGCCGACTGGACATAAGCTGAAGCCTGAGATTC GTACCGTGGCAGCTTGTATCAAGCATTTGAAAAGTAAAGGTGAGATGGAAGCAGCGGAAGAGATACTAGAGAAGATTAGAGGAAACTGTCACTTTCCAGC CACTGCTTTGGATAAGTTGGAAGGTTATTTGAAGGACGAGAGCCGGAATGATGGACGTCTTGATGAGATGGATGATGCTGGTGACCTGACGATAGACGAT GAAGAAACACCGGAGCCGTGGAGTTCAAGTGCTGCGGCAACAGCATCAGCATCAAATTGA
AA sequence Show only first row Show all	>Lus10033698 pacid=23143528 polypeptide=Lus10033698 locus=Lus10033698.g ID=Lus10033698.BGIv1.0 annot-version=v1.0 MNQLSHGGGQLRQAISKLSRVASFSFHSRSRTSPPAFTSAPPDSLYNRVWRAGHPSISVVEVIEKWLDEGKQIKQSELDSLIRNLRRHRRHRQALQLSEW MRDQSCYSDSPGEIAVRLDLISKVRGLEQAEEAFEAIPEASRTFQVYGALLSCYARDLLVEKAEATMTKMRELKFLRSSLPYNLMLTLYHHTKNHEKLDA LLKEMEEKGVASDIYTNNILLNAYGASSRIQEMEYLLNKLEGDTLNKVDWHSYFVVASSYLKAGEKEKAKAMLKKLEGLTTYKSRKFCYEVLISLYANAG EMDQVYRMWDLYKSFGKMFNSGYLCMISSLVKLKNLDGAEKIWEEWLSKKTFQDTRILNQMVMGFSRKGLWEKAEECVNKVAEVGGKPNPITWSCLSVGY RVGGEMDKAVETVKKAVSERRSKPTGHKLKPEIRTVAACIKHLKSKGEMEAAEEILEKIRGNCHFPATALDKLEGYLKDESRNDGRLDEMDDAGDLTIDD EETPEPWSSSAAATASASN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10033698 [exp]	0	1
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	3.3	0.8728
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	4.5	0.8696
AT4G08940			Ubiquitin carboxyl-terminal hy...		Lus10008711 [exp]	7.3	0.8189
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	8.0	0.8435
AT4G16141	GATA		GATA type zinc finger transcri...		Lus10020684 [exp]	12.7	0.7833
AT2G37020			Translin family protein (.1.2)		Lus10029829 [exp]	15.2	0.8411
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Lus10043243 [exp]	17.0	0.8403
AT3G07590			Small nuclear ribonucleoprotei...		Lus10025186 [exp]	19.4	0.8293
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10004890 [exp]	19.5	0.8038
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10023758 [exp]	24.5	0.8200

Compare expression of checked genes

Lus10033698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.