Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04060 49 / 6e-06 NAC ANAC046 NAC domain containing protein 46 (.1) AT3G10490 47 / 1e-05 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT3G55210 47 / 1e-05 NAC ANAC063 NAC domain containing protein 63 (.1) AT3G56530 47 / 1e-05 NAC ANAC064 NAC domain containing protein 64 (.1) AT2G33480 46 / 3e-05 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT3G17730 45 / 3e-05 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G76420 46 / 4e-05 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G10480 45 / 0.0001 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT5G61430 44 / 0.0001 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G46590 44 / 0.0001 NAC ANAC096 NAC domain containing protein 96 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031639 [exp] 600 / 0 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1) Lus10031595 [exp] 332 / 3e-113 ND / Lus10010294 [exp] 250 / 3e-78 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10009858 [exp] 238 / 6e-74 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10025078 [exp] 124 / 2e-30 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10024006 [exp] 122 / 2e-29 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10033676 [exp] 112 / 1e-26 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10008240 [exp] 99 / 1e-22 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10008200 [exp] 96 / 1e-22 ND 43 / 6e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028300 [exp] 118 / 5e-29 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028700 [exp] 116 / 9e-29 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G029200 [exp] 105 / 9e-26 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G028900 [exp] 100 / 2e-23 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.016G027900 [exp] 96 / 1e-21 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 88 / 1e-18 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.019G063000 [exp] 84 / 2e-18 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G231300 [exp] 74 / 5e-14 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.014G163600 [exp] 72 / 2e-13 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.001G220500 [exp] 64 / 9e-11 AT1G77450 66 / 4e-12 NAC domain containing protein 32 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10033699 pacid=23143456 polypeptide=Lus10033699 locus=Lus10033699.g ID=Lus10033699.BGIv1.0 annot-version=v1.0 ATGGCCATCGCTCCGATCATCAACGGCGATCCCCTCTTCTCGCTGCCGGCGGCAGCAAAATTCATCCCCACGAATACAGAATTAGTCCAACACTACCTCT ACAACTACGTCCACGGACACATGACTCCCGAGCAGTGCTACCCTGTCCAAGAATCCGATCTCTACGGCGAAAAGGAGCCATGGGAGCTGTGGAAGGATCA CCAAGTCTGGTCCCACCGGAAGCCGGACGAAGCCGCTTACCTATTCACCAAGCTGAAGAAGAAGTCGAAGAACGCCAAGTACTTCGAGCGGAGGATCGGG AATTGCGGCGGGAGCTGGCACGGCGAGGATTCGGAGAACGAGTTTGTGAAATTCAGAGGCGGAGACGGATTGATGTGGGCCGGGAAGAAGAGGAAGTTCA AGTACGAGAATAAGAAATCGGAGACGGAGCATGGGAAGTGGTTTTTGTACGAGTTTAGGCTCGAGAATGTCGAGAGTAAGAGTTCGTTCGAGACGGCGAT TTGTAAGCTGAAGATCAACGGGTCTCCGTTCGTCGAGAAGGAATTGGGGAAGATGATGAATAGGAAGAGGAAGCTTGACGATGTCTTGGGCGGTATTCTT CATTGGGAATTGGAATTCCGTGGCCCTGCTCTCAAGACGTTACAGCTTGATCGGAAGCAGAGCAATTCCGATGTCGCTGCCGTTCCGGTCGTGATTGAGA ACGAAGCGGCTGCGTTTCAGGCATCTGGTGATGAAATTGTGAAGGAAACGACTGCGTTTCATGGATCTGGTGAGATTGAGAATGAAACGGTGCCGTTTAG TGATGTTCTGGACAAAGATCCGAATTCGGAAAGGTTAGCTTTCACTTTGGAAGAGCTGTTTGGGGGTGGGAGTGAAGTTGTTGTTCCATTGCTACCCACG GAGATCGCCTCCGAAACGACACCGTATGAGAAGGAGAAAGAAACGGTGTCGTTGGAGGTTGATCATGACGATTCAGAGTTGGGAGACTTTGCCCTTTTTT TGGAAGAGGAATTGGAAAGTGAACCAGAGGCCGTTGGTGGTGATGTTCACATTAATGTTGTCAATGTCAATGAAGAAGAAGAAGCACCGAAGAATGGAGG CTCAATTAAGGCCAAGACGGATACAGAGGAGATCACTCGAATTGGTGATGATCAGGCTGCGATCTGTACCAGTAAGGATGGAGCATTCAACGGAGGAGAT CAGGAGGTGCAAATGCGAGATTGTGGGGGTGTTTCGACGAAGATGGTACAACAGCAGCAGCCATGGAGTTTGCCCCAATGGCTACTGGACGACACTGAGG AAGATAATAATGACTGTATTCCTATAGGTAATCTTTGGGATTGTGATGATTCGTTACCACTTCCATCTTCTTATGTGAGTTATTATCGTGTTTAA
AA sequence Show only first row Show all	>Lus10033699 pacid=23143456 polypeptide=Lus10033699 locus=Lus10033699.g ID=Lus10033699.BGIv1.0 annot-version=v1.0 MAIAPIINGDPLFSLPAAAKFIPTNTELVQHYLYNYVHGHMTPEQCYPVQESDLYGEKEPWELWKDHQVWSHRKPDEAAYLFTKLKKKSKNAKYFERRIG NCGGSWHGEDSENEFVKFRGGDGLMWAGKKRKFKYENKKSETEHGKWFLYEFRLENVESKSSFETAICKLKINGSPFVEKELGKMMNRKRKLDDVLGGIL HWELEFRGPALKTLQLDRKQSNSDVAAVPVVIENEAAAFQASGDEIVKETTAFHGSGEIENETVPFSDVLDKDPNSERLAFTLEELFGGGSEVVVPLLPT EIASETTPYEKEKETVSLEVDHDDSELGDFALFLEEELESEPEAVGGDVHINVVNVNEEEEAPKNGGSIKAKTDTEEITRIGDDQAAICTSKDGAFNGGD QEVQMRDCGGVSTKMVQQQQPWSLPQWLLDDTEEDNNDCIPIGNLWDCDDSLPLPSSYVSYYRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	0	1
					Lus10014737 [exp]	1.4	1.0000
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	2.0	1.0000
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	3.0	1.0000
					Lus10021773 [exp]	3.5	1.0000
AT4G27170		SESA4, AT2S4	seed storage albumin 4 (.1)		Lus10040395 [exp]	3.9	1.0000
					Lus10039552 [exp]	4.2	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035900 [exp]	4.6	1.0000
					Lus10019558 [exp]	4.9	1.0000
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10008000 [exp]	5.2	0.9920
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	5.7	0.9780

Compare expression of checked genes

Lus10033699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.