Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65680 233 / 2e-75 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 213 / 9e-68 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 197 / 4e-62 EXPB6 beta expansin 6 (.1) AT4G28250 198 / 5e-62 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 186 / 6e-57 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT3G60570 184 / 1e-56 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1) AT4G17030 129 / 2e-35 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 112 / 7e-29 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT5G05290 110 / 3e-28 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT3G45960 103 / 3e-26 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031638 [exp] 514 / 0 AT2G20770 238 / 3e-76 GCR2-like 2 (.1) Lus10036066 [exp] 229 / 4e-74 AT1G65680 286 / 1e-97 expansin B2 (.1) Lus10038933 [exp] 201 / 1e-62 AT1G65680 301 / 1e-102 expansin B2 (.1) Lus10018583 [exp] 186 / 3e-57 AT4G28250 398 / 1e-141 expansin B3 (.1.2) Lus10039816 [exp] 186 / 3e-57 AT4G28250 402 / 3e-143 expansin B3 (.1.2) Lus10040149 [exp] 140 / 2e-39 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10000957 [exp] 138 / 9e-39 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10011013 [exp] 134 / 2e-37 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10001009 [exp] 132 / 1e-36 AT4G17030 308 / 2e-106 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066300 [exp] 244 / 1e-79 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.013G134300 [exp] 191 / 2e-59 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 186 / 2e-57 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.003G083200 [exp] 130 / 1e-35 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 127 / 7e-35 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G087000 [exp] 121 / 2e-32 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.004G181700 [exp] 119 / 2e-31 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.009G141400 [exp] 116 / 3e-30 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.001G147200 [exp] 108 / 1e-27 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.017G092700 [exp] 104 / 6e-26 AT5G39280 325 / 6e-113 EXPANSIN 23, expansin A23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10033700 pacid=23143275 polypeptide=Lus10033700 locus=Lus10033700.g ID=Lus10033700.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCGATGCTTAGAAGATCATGGTCGCCTCCATTGATGATCGCTGTGCTTCTTGTTCAGCTTCTTTCTTCTTTGAATTTCTGTTTATCTACTC ATAATAACGACACCCAGTATCTAAATGCAGTGGCCACCTGGTACGGCCCTCCCACCGGCGCCGGAAGCACCAGTGGGGCATGCGGGTATTGTGAGTCGGT AGAGAAGCCGCCGTTGCACAAGTTGATCGCCGCCGGAGGGGATGCGTTTTACAAGTCAGGGAAAGGTTGTGGAGCTTGCTATAAGGTGAAATGCAAATCC CATCCAGATTGTTCCAGAAAGCCGGTCCATATCGTCATCACCGACCAGTGCCCCAACACCAACGAGCATTTCGACATGAGCGGCCACGCCTTCGGAGCCA TGGCCATCCCCGGCAAGGAAGAGTCCCTCCGTCACGCTGGAAAGTTAGACGTCAAATATAGAAGGTTTCCGTGCGAGTACAAGGAGACTCCGGTGAAGTT CCACGTCGACGCCAATTCGAATCCGTACTATCTAGCCGTCATGATCGAGTTCCTCCAGGGTGACGGCACACTTTGCTTAGTGGAGCTAAAAGCAGCGAAT TCGAACGAGTGGATACAAATGCAGCCGTCATGGGGAGCTGTTTGGAAACACGATTGCAGCTCGCCACTCGAAGGTCCGGTATGTTTCCGGCTGACTTCCG GCGAGACCAAACAAGTCACCGTCTTCAATGATATCCTTCCCAAGGACTGGAAAGCCGGTGGAGACTATCATGCGTCTCCAAGGACAGAAGTCACTGTCTT CATCTTCATTGATGATTGGGTTGGGTTACCGAGCTCAGCTGGAACTATGAGCGCCTTGATCTTTACTTCCGCGGCCTCTCGGTGCCTTTTTTCTTGTGCT GCTTCCGTTCTAACTGACCCTGATTACTCCCACCTTCTTATGTCCCTGATGTCGAGGGAGCTTCTTCTTTTATGGATCCGGACACCCAAAAGGATGTAG
AA sequence Show only first row Show all	>Lus10033700 pacid=23143275 polypeptide=Lus10033700 locus=Lus10033700.g ID=Lus10033700.BGIv1.0 annot-version=v1.0 MAPPMLRRSWSPPLMIAVLLVQLLSSLNFCLSTHNNDTQYLNAVATWYGPPTGAGSTSGACGYCESVEKPPLHKLIAAGGDAFYKSGKGCGACYKVKCKS HPDCSRKPVHIVITDQCPNTNEHFDMSGHAFGAMAIPGKEESLRHAGKLDVKYRRFPCEYKETPVKFHVDANSNPYYLAVMIEFLQGDGTLCLVELKAAN SNEWIQMQPSWGAVWKHDCSSPLEGPVCFRLTSGETKQVTVFNDILPKDWKAGGDYHASPRTEVTVFIFIDDWVGLPSSAGTMSALIFTSAASRCLFSCA ASVLTDPDYSHLLMSLMSRELLLLWIRTPKRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10033700 [exp]	0	1

Compare expression of checked genes

Lus10033700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.