Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20770 587 / 0 GCL2 GCR2-like 2 (.1) AT1G52920 509 / 1e-180 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) AT5G65280 322 / 1e-106 GCL1 GCR2-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020719 [exp] 546 / 0 AT1G52920 578 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Lus10031638 [exp] 315 / 4e-104 AT2G20770 238 / 3e-76 GCR2-like 2 (.1) Lus10025736 [exp] 315 / 5e-104 AT5G65280 545 / 0.0 GCR2-like 1 (.1) Lus10035926 [exp] 313 / 4e-103 AT5G65280 547 / 0.0 GCR2-like 1 (.1) Lus10034698 [exp] 43 / 1e-05 AT1G52920 47 / 7e-08 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134700 [exp] 629 / 0 AT2G20770 605 / 0.0 GCR2-like 2 (.1) Potri.001G403200 [exp] 568 / 0 AT1G52920 601 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Potri.005G072500 [exp] 344 / 1e-115 AT5G65280 586 / 0.0 GCR2-like 1 (.1) Potri.007G096500 [exp] 333 / 2e-111 AT5G65280 553 / 0.0 GCR2-like 1 (.1) Potri.011G122300 [exp] 150 / 1e-43 AT1G52920 171 / 7e-52 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF05147 [flax] [poplar] LANC_like Lanthionine synthetase C-like protein
Representative CDS sequence Show only first row Show all	>Lus10033701 pacid=23143540 polypeptide=Lus10033701 locus=Lus10033701.g ID=Lus10033701.BGIv1.0 annot-version=v1.0 ATGACTGATCGATTCTTCCCCAACATAATGCCGGACTACGTCTCGGAAGCTCGGCCGACGGCCGAAAATGATCCTCCAGAGCCGGCGACGGAATCCCAAT CCCATCAGGATCCTCTTGTCAACCTTCTCTCCATGCCGTACTCGTCTCTCTCCCAGCGCTTCCAACGTGCCGCATTGGATCTTAAAGAAACCATAGTGAT GGAAACGTGGGGGACGAGTGGGCAACCTGTGAGAGATTTCACGCTTTACAGCGGCACCCTCGGCACCGCTTACTTGCTTTTCAGGGCGTATCAGGCGACT GACAACAAACCTGATCTGCTTCTCTGTTTGGAGATTGTTAAGGCCTGTGACTCTGCTTCCTCAGGTTCCAGGGACGTGACATTTTTATGTGGAAGAGGCG GTGTTTGCGCCCTTGGAGCTGTGGCAGCAAAGTATGCTGATGATGAATCATTAACGACTTACTATCTTAACCAATTTGATGAGGTTAAGCTGTCCTCAGA TCACTCTGATGAGTTCTTGTATGGAAGGAGTGGGTTTCTGTGGGCTTGTTCGTTCATTAACAAGCATATTGGTGATGGGACGATTCCACACACGAAGATA CGTACAGTTGCCGATGAAATTATCAAGAACGGAAGGGAAATGGCGAAGGATGGAGGTCCTCCGTTAATGTACGAATGGTATGGAGAGAGGTACTGGGGTG CTGCACACGGTCTGGCAGGTATTATGCATGCTTTGATGGATGTTGAACTTACACAAGAGGAGATTAAGGATGTTAAGGATACCTTGTATTACATGATCAA GAATCGGTTTCCGAGTAAAAACTATCCGTCAAGTGAGGAAGATTGCTGCAGGGATGTTCTTGTGCATTGGTGTCATGGTGCTCCAGGGATCGCCCTTACG TTCATTAAAGCAGCCAAGGTTTTCGGAGATACAGATTTCCTGGAAGCTGCTATGGATGCAGCAGATATAATATGGAACCGGGGTCTCCTCAAGCGAGTTG GAATTTGCCACGGCATTAGTGGGAACGCATATGTTTTCCTATCGTTATACCGGATGACAGGCAACCATGAATTCATATACAGAGGCAAAGCTTTCGCTTG CTTTCTTCTCGACAGAGCTCACAAACTCATATCAGAAGGAGAAATGCAAGGAGGCGATAGCCCTCACTCACTTTTCGAAGGCATTGGAGGTATGGCTTAT CTACATCTAGATATGATTGATCCACTCAAGTCCAGATTCCCTGCTTACGAACTTGATTGA
AA sequence Show only first row Show all	>Lus10033701 pacid=23143540 polypeptide=Lus10033701 locus=Lus10033701.g ID=Lus10033701.BGIv1.0 annot-version=v1.0 MTDRFFPNIMPDYVSEARPTAENDPPEPATESQSHQDPLVNLLSMPYSSLSQRFQRAALDLKETIVMETWGTSGQPVRDFTLYSGTLGTAYLLFRAYQAT DNKPDLLLCLEIVKACDSASSGSRDVTFLCGRGGVCALGAVAAKYADDESLTTYYLNQFDEVKLSSDHSDEFLYGRSGFLWACSFINKHIGDGTIPHTKI RTVADEIIKNGREMAKDGGPPLMYEWYGERYWGAAHGLAGIMHALMDVELTQEEIKDVKDTLYYMIKNRFPSKNYPSSEEDCCRDVLVHWCHGAPGIALT FIKAAKVFGDTDFLEAAMDAADIIWNRGLLKRVGICHGISGNAYVFLSLYRMTGNHEFIYRGKAFACFLLDRAHKLISEGEMQGGDSPHSLFEGIGGMAY LHLDMIDPLKSRFPAYELD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	0	1
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	2.2	0.8205
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10016793 [exp]	3.3	0.7766
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	5.5	0.7692
AT5G51170			unknown protein		Lus10031950 [exp]	12.1	0.7950
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10017187 [exp]	13.0	0.7797
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Lus10042621 [exp]	16.2	0.8031
AT4G19950			unknown protein		Lus10018322 [exp]	19.6	0.7896
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10010736 [exp]	20.2	0.7390
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	37.0	0.7210
AT5G44710			unknown protein		Lus10038399 [exp]	41.2	0.7845

Compare expression of checked genes

Lus10033701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.