Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14830 208 / 4e-61 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G34220 124 / 7e-30 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G35730 119 / 7e-29 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G19710 116 / 5e-27 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 111 / 7e-27 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G79910 111 / 1e-26 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G51900 109 / 7e-25 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 107 / 5e-24 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 102 / 3e-23 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G52315 93 / 2e-20 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039808 [exp] 416 / 7e-141 AT2G14830 181 / 2e-51 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10018577 [exp] 404 / 2e-135 AT2G14830 170 / 8e-47 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 135 / 4e-34 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10041836 [exp] 134 / 5e-34 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10006061 [exp] 134 / 6e-34 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028383 [exp] 134 / 8e-34 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10000978 [exp] 120 / 2e-28 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10040542 [exp] 120 / 3e-28 AT2G19710 309 / 2e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034905 [exp] 113 / 2e-26 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135700 [exp] 232 / 2e-68 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G038600 [exp] 173 / 6e-47 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.011G122800 [exp] 152 / 8e-41 AT2G14830 137 / 5e-36 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 139 / 1e-35 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 127 / 5e-31 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G117100 [exp] 127 / 7e-31 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.006G149800 [exp] 127 / 1e-30 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.010G127000 [exp] 119 / 5e-29 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.008G121300 [exp] 117 / 6e-29 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.003G054500 [exp] 116 / 1e-27 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10033703 pacid=23143361 polypeptide=Lus10033703 locus=Lus10033703.g ID=Lus10033703.BGIv1.0 annot-version=v1.0 ATGTTCGATTGCCTTTTCGGCTGGAGCAAAGCTTCCAAATGCAAGAGGACTGTGAGGAGATTGCAGATGAGGATGAGAGCTATGAAGAACAAGAGGGAAG CAATGGTGAGAGTTCTGAAGCAGGATGTTGCTCAGCTCATCAAGCTTGGTTGCCATGACATTGCTTTCCACAGGGTGGAGCAGCTGGTGCAGGATGAAGA CCTGCTCAAAGTCTACGAATTGCTCGACAATTACTGCGACGCCATCATCATTAACCTATCCTACATACGTAAGCGAAAGGACCTTCCGAATGACATCAAC GAAGCAGTTTCGACCCTGGTGTTCGCATCAGCCAGGTGCGGTGACCTCCCTGAGCTAATCACCCTTCGTAAGCTCGCTGAGGATAGGTATGGTTACCGGT TCGAGAAGACTGCTCTTGATCTCTTGCCTGGAAACCTTGTCAACCATCAGGTCATAGAGAGGCTCACGGTTCGGGTTGTTTCTGATGATCTGAAGCTCAG GTTGGTTCATGAGATCGCCAGGGAAAATCTGCTCTTGTCAGAAGTCTTAGTGATGTACCTTCCGCAACGACAAAAACAGGCAGATGATGACCAACAACCT TCCAAGGAAAAAAAACCTGACAATTATCCTGAACGAAAGCCTGATACATACTGTGATTCATCATCGAGCAGCTTCGGATTCAGCAGCCAGAACTCATTCT CAAACACCAATTCCTTCAGCTCTTCTACCACGGTTCAATCTTCGCAAGACGAATTGGAGAACCTGATGACCCGAATCGGCATAAAAGAAAATCTGATGCC TTACACGACTACAACTATTACTACAAAACCTGAACCTGACATTTCAGAACCAACTAGAAGCATCAACGACCAGAAGAAGCAGCGGAAATCCGCGACATCT TCCTCGGAGAGTCTTCCACAGCTGCCAGAGGAGATGTTTGTGTACCTGGACGACGTGGAGGAAGTTCGATCTTCCAGCAAAGAAGGAAGCTTCCCACAGG ATCAGAGGGGTTTCAAGTTCAGAACCGAAAATGCAGACGAAATCAGCGATGTCGACTATAGGGATCCAGATGATGATCATCATGACTCCTCAAGTGATAA GGTTTCAACAATAAGCTCAATCAAATCGAGGAGAAGAGCTAAAATAATAAGTGCCAGGAAGAGGTCACGAAAGTCGAGGGAAATGGCGGGATTGGTCATC GAAGAAGACATTATGTACTATGGAACCCCTCCCAGATCTCGATTCGATCATGGATCGGGTGGTTGCTACCGGAACCATCCTTGCTACTGCTGTACCAGGC AATTCCATCAGGAAGATGTTTTGACTCCATCGTCGGATCGAGATTCGGATAGATTCTGGAGGAATGTCGAGAATCCTGACGAGAAACGAAATAGTAGAGG GAAGGGGCCGTATTCGAGAGCAATGTCAATGCCACAGGAGAGGTACGGCTGTAGCAGCAGTGACAAGCAGGAGAATAACATCTCGAGAACGATATCGTTT CCAGATCAGTCGCCTAACCATGTGCATCCTAAGCTTCCGGACTACGATGATCTCGCGGCGAAGTTCATGGCCCTGAAGAAGGATCATCATAGCCATGGTC GTTACTGA
AA sequence Show only first row Show all	>Lus10033703 pacid=23143361 polypeptide=Lus10033703 locus=Lus10033703.g ID=Lus10033703.BGIv1.0 annot-version=v1.0 MFDCLFGWSKASKCKRTVRRLQMRMRAMKNKREAMVRVLKQDVAQLIKLGCHDIAFHRVEQLVQDEDLLKVYELLDNYCDAIIINLSYIRKRKDLPNDIN EAVSTLVFASARCGDLPELITLRKLAEDRYGYRFEKTALDLLPGNLVNHQVIERLTVRVVSDDLKLRLVHEIARENLLLSEVLVMYLPQRQKQADDDQQP SKEKKPDNYPERKPDTYCDSSSSSFGFSSQNSFSNTNSFSSSTTVQSSQDELENLMTRIGIKENLMPYTTTTITTKPEPDISEPTRSINDQKKQRKSATS SSESLPQLPEEMFVYLDDVEEVRSSSKEGSFPQDQRGFKFRTENADEISDVDYRDPDDDHHDSSSDKVSTISSIKSRRRAKIISARKRSRKSREMAGLVI EEDIMYYGTPPRSRFDHGSGGCYRNHPCYCCTRQFHQEDVLTPSSDRDSDRFWRNVENPDEKRNSRGKGPYSRAMSMPQERYGCSSSDKQENNISRTISF PDQSPNHVHPKLPDYDDLAAKFMALKKDHHSHGRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14830			Regulator of Vps4 activity in ...		Lus10033703 [exp]	0	1
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	1.0	0.9700
AT4G02830			unknown protein		Lus10014664 [exp]	2.0	0.9558
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	6.7	0.9544
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Lus10042040 [exp]	7.0	0.9442
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039559 [exp]	7.4	0.9415
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	8.3	0.9554
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	12.8	0.9552
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	16.1	0.9404
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023035 [exp]	16.7	0.9305
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020481 [exp]	17.0	0.9174

Compare expression of checked genes

Lus10033703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.