Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04980 302 / 1e-90 unknown protein AT1G11070 276 / 4e-82 unknown protein AT1G61080 222 / 1e-61 Hydroxyproline-rich glycoprotein family protein (.1) AT3G25690 76 / 4e-14 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G07120 72 / 3e-13 unknown protein AT1G48280 72 / 1e-12 hydroxyproline-rich glycoprotein family protein (.1) AT4G18570 69 / 1e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031636 [exp] 1003 / 0 AT4G04980 313 / 3e-95 unknown protein Lus10018473 [exp] 279 / 2e-81 AT4G04980 347 / 1e-104 unknown protein Lus10038307 [exp] 273 / 5e-80 AT1G11070 330 / 2e-99 unknown protein Lus10011209 [exp] 275 / 7e-80 AT4G04980 336 / 2e-100 unknown protein Lus10036174 [exp] 204 / 2e-61 AT4G04980 236 / 6e-73 unknown protein Lus10031863 [exp] 72 / 3e-13 AT1G07120 393 / 2e-135 unknown protein Lus10036173 [exp] 72 / 9e-13 AT4G04980 96 / 2e-20 unknown protein Lus10034264 [exp] 66 / 9e-11 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034382 [exp] 66 / 9e-11 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038400 [exp] 329 / 3e-101 AT4G04980 387 / 4e-121 unknown protein Potri.011G047100 [exp] 320 / 3e-97 AT4G04980 358 / 1e-109 unknown protein Potri.001G317001 [exp] 295 / 7e-90 AT4G04980 320 / 5e-98 unknown protein Potri.010G003100 [exp] 71 / 1e-12 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G279000 [exp] 64 / 2e-10 AT1G07120 440 / 2e-153 unknown protein Potri.001G460300 [exp] 64 / 4e-10 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 64 / 4e-10 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.009G073600 [exp] 61 / 2e-09 AT1G07120 434 / 4e-151 unknown protein Potri.011G064500 [exp] 61 / 3e-09 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156500 [exp] 60 / 6e-09 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033704 pacid=23143533 polypeptide=Lus10033704 locus=Lus10033704.g ID=Lus10033704.BGIv1.0 annot-version=v1.0 ATGCCAGGTCTGCCATCAGAACCTGCAACCATGGCTATTGGTCCAGCATCACAGGCAATGAGGAATGAGAAATCAAATGGATGGGCAAGCAGCATATTGC TGATGGCAGAGCTCAGAAAGAGGATACTAACCTTTAGAGGAGCCATTGATCTCCCTCCTTGCAATGCTTCTGTCCCCGTTAATGAGCTGCTGATGGGATT GATTCTAGATCTCCGCGACACATACCCCGAGGCTGCGAGCTACAATATAACAGCAGAAAGTTCCTTGAATCAGGTAATGATTCAACTCTACAATGTCTTG AAATCTGTTGGAGACTCGTGGTACGAAAACAATGGCAAAGAAGAAGCGTCGAGCGATAGCAGTAGCATGGAGAATTCGACGCTCGAGCAACTCAGTGAAA AGGTGCTTGGAAAGATCACTGAACTGATTAACACTATAAAGGAAACCCGAAATCCTGATGAAGGCTCTGTCAGTATGATGGAAATGTGCACTGAGCCGAA TTCGAGAAAGAGAGCTACAATCAGTCCATTGAACAGTCCAACATCGTCGGGAAATAATTCTCCACGGCTTTTCAGATTAGAAGCTGTGAAGAAACTGAAG CCGATAGAAATGAAGTACCTCCCGTCCAAGTTGGTGTCTCCTCCGAGTCGCGTAGATCACGCCTATGTCAACGAGGCAAGAGGATCTCAGGTGTTTGATA ACAGAAAGGCTGAAAATGTTCCTTCAGGATTCCGAGCTGAAAGGAGTTCCAAAGAACCTGAAGAGTGCCAAGATGGTAACTTTTTTATGAGAGCCTCAGG TTCTGATTCAAGCATTATGATGTCTGTAACAAGTTACAAGTCAAATGTGACATCAGAAGCAAAAGTTGCAGCAGAGAAAAGTGTTCCATGTCCGCCAAGC AAACTTATTGGTGACATTTGTAGTACTGCACAAGTCACTGGCTCGGAACCAAACCAGAAATCTGATGCAAACGAATCGCCATCAATGCAGAGACGACCGC CTCCTCCTCCTCCTCCACCATTGCCACCTTCAAGCAAGGTCGTCCCGTGTTCTGGTTCAAGCGTCAAACATGATACAAACAGATCGTCGGAGATACTGAA AATACCACCCCCGCCTCATCCTCCGCCATTGCCACCAAAGAATCTGTCCTTAAAGGAAACTACTGCATCTCCATCTCCACCTCCACCATGGAATCCGAAT TCGACAGGATCGTCCACAAAAGGATCCATGCCTCCACCGCCTCCTCCACCAGGGCTAGGGAAAGGACTCCAGCGTCCGAGGAATAACTCGAGATTAAAGA GATCAATCCTGATGGTTTATGTATATCAATGTCTGAGGAAAAAGGAACAAGGTTCAGCTTCAAAGAGTAACAAAGCAACTCAAGGGAAGAAATCTCAAGT TGGTAAAACTGCAACGGCCAAACAAGGAATGGCTGAAGCAATTGAAGAAATCACCAGAAAATCAGCATATTATCAGAAGATTGAGGAGGATGCCAAGAAA TATGCAGCAATGGTGCTGGAGATCAAGGCTGCTGTTAGCGCGTTCGAGACGAAGGACATGGAAGAACTTCTTAAATTCGTCAGCTATGTTGAAGGAAACA TGGAGAAATTATCAGACGAATCTCAGGTGCTGGCAAGGTTTGAAGACTTTCCAGAAAAGAAACTCGAAGCATTGCGAGGAGCAGGTGCGCTATACTCGAA GCTGAAAGGAATGTCTAAGAAGCTAAAGGAATGGAAAATAGAACCTCCTACAGGCCAGCAGCTAGATAAGATCGAAACCTACTTTAACAAGATCAAGCGC GAGATAGAGACAGTGGAGCTAAGCAAAGACGAAGAATCGAAGCGGTTCAAGAGCAACAAAATCCACTTCGACTTCAACGTTTTAGTACAGGTTAGAGAAT CGATGGTCGATGTTTCTTCGAGCTGCATGGAGCTGGCACTCAAGGAATGGAGGGAAGCAAAGGCATCAAAGGGTGCAAATGGTGGCGGAACGAAACTAAA AGGCAAAGCAACTGCATCAGGTTTGGTTCTGTGGAGGACATTCCAGTTCGCTTACCGAGTGTATAGCTTCGCAGGAGGACAGGATGATCGTGCGGACTTG CTCACGAGAGAGCTAGCTCGCGCAATGGAAATCGATCCTTCACCCAAGTAG
AA sequence Show only first row Show all	>Lus10033704 pacid=23143533 polypeptide=Lus10033704 locus=Lus10033704.g ID=Lus10033704.BGIv1.0 annot-version=v1.0 MPGLPSEPATMAIGPASQAMRNEKSNGWASSILLMAELRKRILTFRGAIDLPPCNASVPVNELLMGLILDLRDTYPEAASYNITAESSLNQVMIQLYNVL KSVGDSWYENNGKEEASSDSSSMENSTLEQLSEKVLGKITELINTIKETRNPDEGSVSMMEMCTEPNSRKRATISPLNSPTSSGNNSPRLFRLEAVKKLK PIEMKYLPSKLVSPPSRVDHAYVNEARGSQVFDNRKAENVPSGFRAERSSKEPEECQDGNFFMRASGSDSSIMMSVTSYKSNVTSEAKVAAEKSVPCPPS KLIGDICSTAQVTGSEPNQKSDANESPSMQRRPPPPPPPPLPPSSKVVPCSGSSVKHDTNRSSEILKIPPPPHPPPLPPKNLSLKETTASPSPPPPWNPN STGSSTKGSMPPPPPPPGLGKGLQRPRNNSRLKRSILMVYVYQCLRKKEQGSASKSNKATQGKKSQVGKTATAKQGMAEAIEEITRKSAYYQKIEEDAKK YAAMVLEIKAAVSAFETKDMEELLKFVSYVEGNMEKLSDESQVLARFEDFPEKKLEALRGAGALYSKLKGMSKKLKEWKIEPPTGQQLDKIETYFNKIKR EIETVELSKDEESKRFKSNKIHFDFNVLVQVRESMVDVSSSCMELALKEWREAKASKGANGGGTKLKGKATASGLVLWRTFQFAYRVYSFAGGQDDRADL LTRELARAMEIDPSPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04980			unknown protein		Lus10033704 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10037110 [exp]	1.7	0.7483
AT1G32120			unknown protein		Lus10023735 [exp]	3.5	0.7008
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	7.9	0.7189
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	9.6	0.7189
AT2G15220			Plant basic secretory protein ...		Lus10013863 [exp]	11.0	0.6221
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	11.1	0.7189
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10019238 [exp]	11.2	0.6549
					Lus10017294 [exp]	12.4	0.7189
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	13.6	0.7189
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	14.7	0.7189

Compare expression of checked genes

Lus10033704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.