Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65690 98 / 3e-24 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G54540 89 / 4e-21 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 86 / 7e-20 NHL25 NDR1/HIN1-like 25 (.1) AT2G27080 75 / 1e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G21130 66 / 3e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 53 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35980 51 / 2e-07 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 47 / 3e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 46 / 6e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 45 / 1e-05 NHL22 NDR1/HIN1-like 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031635 [exp] 343 / 6e-120 AT1G65690 101 / 9e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031888 [exp] 98 / 2e-24 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031317 [exp] 95 / 5e-23 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 79 / 5e-17 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 70 / 6e-14 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1) Lus10026428 [exp] 49 / 1e-06 AT5G11890 209 / 7e-67 EMBRYO DEFECTIVE 3135, unknown protein Lus10043410 [exp] 46 / 8e-06 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 45 / 2e-05 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 42 / 0.0002 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135800 [exp] 149 / 6e-44 AT1G65690 112 / 4e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.019G102500 [exp] 95 / 7e-24 AT1G65690 78 / 9e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 91 / 8e-22 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.017G154000 [exp] 92 / 9e-22 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G145500 [exp] 91 / 2e-21 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.015G148200 [exp] 85 / 3e-19 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.004G197600 [exp] 84 / 7e-19 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.009G158900 [exp] 79 / 4e-17 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.009G019600 [exp] 46 / 8e-06 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 44 / 4e-05 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10033705 pacid=23143317 polypeptide=Lus10033705 locus=Lus10033705.g ID=Lus10033705.BGIv1.0 annot-version=v1.0 ATGGACCACCGTGGCCGCGGTGATTCTTCGTGGTCGTCGGACCCTCTCCCACCCCAAACATCCCTCCCAAAATACTCAATCCTCGACAACAACTCATCAC CATCACCATCACCACCACCACCACCACCAACAACAACAACAACCGCCGTCATAAAACCTCCGCCGGAAGGCCGGCGGGTCCCACCCCGGAGACCACTGCA ATCCGACCGCGCAGGAATCTGTTACAAATGCGTATGCTGTTGCTTCTGCTTCTGGTTCCTCCTAATCCTCGCATTGGTTGGCCTCGTCGTCCTCCTCTAC TCGATCCTCCAGCCTCGGTCTCCGTCTTTCTCCGTCCAGCATTTCCAAGTCAACGCCTTTAACCTCGAGCAAGACTCTTCCGTCCTATCCACGGAAATGG TCCTGATTTTGAAATCGAAGAATCCGAACAGGGTAATTGGATTCTTCTACGGCAGGGGAAGCTCTGTTTCCATGTGGTACAACGGCACCGTTTTTTCTTC AGGAAAGCTTCCTCCTTTCCGTCAGGATCCTGACAGTACAACCCTGACGAACGTGACCATGCAAGGGACAGTGGAATTCGGAAGGGAGATTCGGGATCTG TTTCGGAAGGATGAACAGGAAGAGGGACGGATTCCTTTGCTTGTGATGTTTAAGGCTCCGGTCGCTGTTGTGATCCAATCGTTCCCGTTGAGGGAGATTG CGGTTTTTGTCAACGGGACTTTGGTTGTTGATAGCTTGAGTCATCCTGACAGAATTCCGAAGATTTTGTCTTCCCAGTATTCATATAGCATTGGGTTGTA A
AA sequence Show only first row Show all	>Lus10033705 pacid=23143317 polypeptide=Lus10033705 locus=Lus10033705.g ID=Lus10033705.BGIv1.0 annot-version=v1.0 MDHRGRGDSSWSSDPLPPQTSLPKYSILDNNSSPSPSPPPPPPTTTTTAVIKPPPEGRRVPPRRPLQSDRAGICYKCVCCCFCFWFLLILALVGLVVLLY SILQPRSPSFSVQHFQVNAFNLEQDSSVLSTEMVLILKSKNPNRVIGFFYGRGSSVSMWYNGTVFSSGKLPPFRQDPDSTTLTNVTMQGTVEFGREIRDL FRKDEQEEGRIPLLVMFKAPVAVVIQSFPLREIAVFVNGTLVVDSLSHPDRIPKILSSQYSYSIGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65690			Late embryogenesis abundant (L...		Lus10033705 [exp]	0	1
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10042046 [exp]	3.7	0.7703
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	4.6	0.8292
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10041451 [exp]	4.9	0.8752
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	5.1	0.8496
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	12.0	0.8240
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	17.3	0.7886
AT5G35960			Protein kinase family protein ...		Lus10027964 [exp]	17.4	0.7680
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	21.0	0.8043
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	22.7	0.7728
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	25.7	0.8007

Compare expression of checked genes

Lus10033705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.