Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15730 1382 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 1359 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 1033 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT2G42010 730 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 716 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 699 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 693 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 688 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G35790 659 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G55180 592 / 0 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031634 [exp] 1683 / 0 AT3G15730 1380 / 0.0 phospholipase D alpha 1 (.1) Lus10039806 [exp] 1512 / 0 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10018575 [exp] 1508 / 0 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1) Lus10041787 [exp] 1083 / 0 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10006819 [exp] 714 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 713 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10041855 [exp] 698 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 694 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 691 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032800 [exp] 1464 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1) Potri.001G193000 [exp] 1455 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.018G131200 [exp] 1230 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.006G253900 [exp] 1125 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.014G074700 [exp] 722 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 718 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 709 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.002G016100 [exp] 709 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 708 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 706 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10033706 pacid=23143375 polypeptide=Lus10033706 locus=Lus10033706.g ID=Lus10033706.BGIv1.0 annot-version=v1.0 ATGGCTAACATGTGTCACAACTTCGTTGCTGGTTGTTTGGTTAGAGGTTCGCTTTGTGCATCTCTTATCCTGGAGAATGCAATTTTCTTGCTGATGATGG GTAAGAAAATGGCGCAATTCCTTGTGCACGGTACTTTACATGTTACCATCTTTGAGGTGGATAAGCTTCCCGGCGCAGACAGCCACAGGCCCAATTTCTT TAAGAAGCTTGTTGATAATATTGGAGAGAAAGTTGGGATTGGAAACGGGATAAGCAAACTCTATGCAACCATCGACATGGAGAAAGCTAGGGTTGGGAGA ACCAGAATTATTGAAAATGAGTACAAAAACCCGAGGTGGTATGAATCTTTCCATATTTACACTGCGCACATGGCTTCGAATGTCATATTCACAGTCAAGG ATGACAATCCTATCGGGGCGACATTGATTGGACGAGCATATGTACCTGTTTCCGAGATACTAGATGGAGAAGAGGTAGATCGATGGGTTGAGATATTGGA TGAGGATAAGAACCCGATCGATGCGGGTTCTAAGATCCATGTGAAGCTTCAGTACTTTGATGTGACCAAGGACCGCAATTGGGGTCTCGGAATCAAAAGT CCAAAGTTTCCCGGTGTGCCTTACACATTCACCTCTCAGAGACAAGGCTGTAAAGTTTCTCTGTACCAGGATGCTCATGTCCCTGACAACTTCGTTCCTA AGATCCCTCTTGCAGGAGGAAATTTCTATGAGCCCCATAAGTGTTGGGAAGATATCTTTGATGCGATAACAAATGCTAAGCACTTCATCTACATTACTGG CTGGTCTGTTTATACTGAGATCAGCTTAATAAGGGATTCCAGGAGGCCGAAGCCTGGGGGAGAGATTATGCTTGGCGAACTGCTGAAGAAGAAGGCAAGC GAAGGTGTTAGGGTTCTTATGCTCGTTTGGGATGACAGAACATCTGTTAAGCTGCTTAAAAAGGACGGCCTGATGGCTACCCATGACGAAGAAACCATGC AGTATTTCCAGAACACAGACGTGAATTGTGTTCTGTGTCCTCGAAACCCCGATGATGGCGGTAGCTTCGTTCAAGATCTTCAAATCTCGACAATGTTCAC TCATCACCAGAAGATTGTTGTGGTGGACCACGACATGCCTAATGGAAGCTCAGAAAGGAGGAGAATTGTTAGTTTTGTTGGGGGCATTGATCTGTGCGAC GGTAGATACGATACCCCCTTCCACTCTGTGTTCAGGACATTGGACACGGCTCACCATGATGACTTCCATCAACCTAACTTTGAAGGTGCTTCAATCACGA AAGGTGGCCCTAGAGAACCGTGGCATGACATCCACTCCCGTCTAGAAGGACCTGTTGCCTGGGATGTTCTGTTCAACTTTGAGCAAAGGTGGAAGAAGCA AGGTGGTAAAGATTTACTTGTTCAACTGAGGGATCTTGAAGACGTCATCATCCCACCATCCCCGGTTACCTTTGATGATGACCGTGAAACATGGAACGTC CAGGTGTTCAGGTCCATCGATGGTGGGGCTGCATTTGGCTTCCCCGAAACTCCTGAAGACGCAGCTAGAGCTGGACTTGTCAGCGGAAAGGATAACATCA TCGACAGAAGTATTCAGGACGCGTATATCAACGCCATCCGACGTGCAAAGAACTTCATCTACATCGAAAACCAGTACTTCCTCGGGAGTTGTTACGGCTG GTATGGTGATGACATCAATCTGGGAGACATTGGTTGCTTGCATTTGATTCCTAAGGAGCTTTCGCTTAAGATAGTCAGCAAAATAGAGGCAGGCGAAAGG TTTACAGTGTATGTAGTTGTTCCAATGTGGCCGGAGGGTATTCCGGAGAGTGCATCGGTTCAGGCCATCTTAGATTGGCAGAGGAGGACTATGGATATGA TGTATCGGGATATTGTCCAGGCTCTCAAAGCTAGGGGCACCATAGAGGACCCTCGGAACTACTTGACATTCTTCTGTCTTGGCAACCGCGAAGCGAAGAA AGATGGGGAGTATGAACCTTCAGAAAGACCAGACCCTGATACAGATTACCTTAGAGCTCAGGAAGCACGACGGTTTATGATCTATGTCCACGCAAAGATG ATGATCGTTGACGACGAGTACATAATTGTTGGCTCCGCCAACATCAACCAGCGATCAATGGACGGATCCAGGGACTCGGAAATCGCCATGGGCGCTTACC AGCCGTACCATTTGACCGTGAGGGAGCCAGCACGAGGCCAAGTCCACGGATTCCGCCTTTCACTGTGGTACGAACACCTCGGCATGCTGGAGGACAGCTT CCTGTTCCCCGAGAGCGAAGAGTGCATCAGGAAAGTGAACGAAGTTGCGGACAAATACTGGGACATGTACTCGAGCGAGTCGCTCGAGCACGATATCCCG GGCCATCTGCTCCGCTACCCGATCGGTGTAGCAAGTGATGGCGATGTGACCGAGCTTCCTGGAGCTGAGTTCTTCCCCGACACCAAGGCTCGTGTGCTCG GTGCGAAGTCGGATTACCTCCCTCCTATCCTCACTACTTAA
AA sequence Show only first row Show all	>Lus10033706 pacid=23143375 polypeptide=Lus10033706 locus=Lus10033706.g ID=Lus10033706.BGIv1.0 annot-version=v1.0 MANMCHNFVAGCLVRGSLCASLILENAIFLLMMGKKMAQFLVHGTLHVTIFEVDKLPGADSHRPNFFKKLVDNIGEKVGIGNGISKLYATIDMEKARVGR TRIIENEYKNPRWYESFHIYTAHMASNVIFTVKDDNPIGATLIGRAYVPVSEILDGEEVDRWVEILDEDKNPIDAGSKIHVKLQYFDVTKDRNWGLGIKS PKFPGVPYTFTSQRQGCKVSLYQDAHVPDNFVPKIPLAGGNFYEPHKCWEDIFDAITNAKHFIYITGWSVYTEISLIRDSRRPKPGGEIMLGELLKKKAS EGVRVLMLVWDDRTSVKLLKKDGLMATHDEETMQYFQNTDVNCVLCPRNPDDGGSFVQDLQISTMFTHHQKIVVVDHDMPNGSSERRRIVSFVGGIDLCD GRYDTPFHSVFRTLDTAHHDDFHQPNFEGASITKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWKKQGGKDLLVQLRDLEDVIIPPSPVTFDDDRETWNV QVFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCYGWYGDDINLGDIGCLHLIPKELSLKIVSKIEAGER FTVYVVVPMWPEGIPESASVQAILDWQRRTMDMMYRDIVQALKARGTIEDPRNYLTFFCLGNREAKKDGEYEPSERPDPDTDYLRAQEARRFMIYVHAKM MIVDDEYIIVGSANINQRSMDGSRDSEIAMGAYQPYHLTVREPARGQVHGFRLSLWYEHLGMLEDSFLFPESEECIRKVNEVADKYWDMYSSESLEHDIP GHLLRYPIGVASDGDVTELPGAEFFPDTKARVLGAKSDYLPPILTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10033706 [exp]	0	1
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10031634 [exp]	1.0	0.9589
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	2.4	0.8637
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	2.8	0.8855
AT5G22040			unknown protein		Lus10000457 [exp]	3.9	0.8323
AT2G40980			Protein kinase superfamily pro...		Lus10031009 [exp]	5.9	0.8572
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	6.3	0.8458
AT5G20300		Toc90	translocon at the outer envelo...		Lus10027712 [exp]	7.0	0.8477
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10023659 [exp]	9.5	0.8162
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	11.0	0.8469
AT5G20300		Toc90	translocon at the outer envelo...		Lus10006471 [exp]	11.5	0.8480

Compare expression of checked genes

Lus10033706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.