Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03420 326 / 3e-111 Protein of unknown function (DUF789) (.1) AT1G03610 313 / 3e-106 Protein of unknown function (DUF789) (.1) AT4G28150 285 / 2e-95 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 225 / 1e-71 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 221 / 9e-70 Protein of unknown function (DUF789) (.1) AT1G15030 159 / 9e-46 Protein of unknown function (DUF789) (.1) AT5G49220 159 / 5e-45 Protein of unknown function (DUF789) (.1) AT4G16100 157 / 9e-45 Protein of unknown function (DUF789) (.1) AT2G01260 155 / 7e-44 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT5G23380 114 / 2e-29 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031632 [exp] 402 / 2e-141 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 360 / 4e-124 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 256 / 3e-84 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 214 / 5e-67 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10036189 [exp] 209 / 1e-64 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10037716 [exp] 140 / 1e-37 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 138 / 5e-37 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 137 / 1e-35 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10018267 [exp] 107 / 2e-27 AT1G73210 127 / 3e-35 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G144000 [exp] 367 / 4e-127 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 365 / 3e-126 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 241 / 1e-77 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 233 / 1e-74 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 156 / 5e-44 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 155 / 1e-43 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 118 / 5e-30 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.008G124000 [exp] 116 / 2e-29 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.004G068700 [exp] 72 / 2e-13 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.017G152601 [exp] 69 / 1e-12 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10033707 pacid=23143467 polypeptide=Lus10033707 locus=Lus10033707.g ID=Lus10033707.BGIv1.0 annot-version=v1.0 ATGGCGGAAATTTCTTTTCAGTCGGAGATTAGGAACCTGAACCGGCTGTGGCATCCATGGGAGAGAGAAACGGTGGAGTACTTCACGCTGGCCGATCTCT GGAACTGCTACGACGAATGGAGCGCGTACGGCGCCGGAGTTCCGATCTCGGTGAACAACGACGGCGAGACTCTGGTTCAGTACTACGTCCCTTACCTCTC CGCCATCCAAATCTTCACCAGTCGGTATAACAAGGATGAGACGGACTCCGGCGACGGGGATCAGTCGACGACGAGGGATTCGTTCAGCGACGACACGTGT AGCGACGAGAGCGACAGCGACAAGGTGTGGAGATGGGACGGGTGTTCGTCGGAAGAAGGAGACGGCGGCGGCGGTCTTTGTCATCTGATCAATGATAGAT TAGGGTATCTCTATTTCCAGCATTTCGAACGGTCGACGCCTTATGGGAGAGTTCCATTGATGGATAAGATCAATGGATTAGCTAGAAGATACCCTGGTTT GTTGTCTTTGAGAAGTGTGGATCTATCACCAGCTAGTTGGATGGCTGTGGCTTGGTACCCTATCTATCACATTCCAATGGGAAGAACAATCAAGGATTTG TCCACTTGCTTCCTTACTTACCACACCCTCTCATCCTCTTTTCAAGATATGGATGTGGAGGATGATATAGAGAGGCCAGAAAGGAAGAGAAAAGAAGGGG AGAGGATATCGTTGGCGCCATTTGGGATGGCGACGTACAAAATGTACGGAGGAGGGAAAGTGTGGATTTCGGGAAATTGTGGAAGGGATCAAGAGAGATT GATGTCGATGTTGAGCGTAGCTGATTCGTGGCTAAAACAACTGAGGAGAGAGCCACCACCGCCTCTGCTGATCAAGTTGTTTGATTCTCCGGCATGGCCA TCGTCGTTCTTTGTGCATACAAACAATAGAGGAAATAACAGAGGATACTCTGCTCTTGCTGCAGCAATGATGCCGAGTTTTGGAGGAGAAGCACAAGCTG AGTCGTCGCTACCATCTTGCTTGTGA
AA sequence Show only first row Show all	>Lus10033707 pacid=23143467 polypeptide=Lus10033707 locus=Lus10033707.g ID=Lus10033707.BGIv1.0 annot-version=v1.0 MAEISFQSEIRNLNRLWHPWERETVEYFTLADLWNCYDEWSAYGAGVPISVNNDGETLVQYYVPYLSAIQIFTSRYNKDETDSGDGDQSTTRDSFSDDTC SDESDSDKVWRWDGCSSEEGDGGGGLCHLINDRLGYLYFQHFERSTPYGRVPLMDKINGLARRYPGLLSLRSVDLSPASWMAVAWYPIYHIPMGRTIKDL STCFLTYHTLSSSFQDMDVEDDIERPERKRKEGERISLAPFGMATYKMYGGGKVWISGNCGRDQERLMSMLSVADSWLKQLRREPPPPLLIKLFDSPAWP SSFFVHTNNRGNNRGYSALAAAMMPSFGGEAQAESSLPSCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03420			Protein of unknown function (D...		Lus10033707 [exp]	0	1
AT5G41560			unknown protein		Lus10028758 [exp]	13.3	0.7728
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10026559 [exp]	14.5	0.7180
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	19.3	0.7246
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10003308 [exp]	19.6	0.7575
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011861 [exp]	47.3	0.7248
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030569 [exp]	50.8	0.6977
AT4G25150			HAD superfamily, subfamily III...		Lus10013478 [exp]	51.8	0.7141
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	54.3	0.7144
AT3G14470			NB-ARC domain-containing disea...		Lus10026109 [exp]	54.7	0.7162
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10012832 [exp]	60.1	0.6968

Compare expression of checked genes

Lus10033707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.