Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03590 569 / 0 Protein phosphatase 2C family protein (.1) AT4G03415 563 / 0 Protein phosphatase 2C family protein (.1.2) AT3G02750 397 / 7e-135 Protein phosphatase 2C family protein (.1.2.3) AT1G79630 396 / 3e-134 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 392 / 5e-133 Protein phosphatase 2C family protein (.1) AT5G36250 363 / 5e-122 Protein phosphatase 2C family protein (.1) AT5G01700 300 / 2e-98 Protein phosphatase 2C family protein (.1.2) AT3G05640 299 / 3e-98 Protein phosphatase 2C family protein (.1.2) AT5G27930 296 / 6e-97 Protein phosphatase 2C family protein (.1.2) AT3G16800 255 / 3e-81 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031631 [exp] 828 / 0 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 652 / 0 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 650 / 0 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10000402 [exp] 389 / 3e-131 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 383 / 5e-129 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 362 / 5e-122 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10041277 [exp] 372 / 7e-118 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10021486 [exp] 349 / 6e-117 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10037431 [exp] 370 / 2e-116 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103100 [exp] 637 / 0 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 627 / 0 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G473300 [exp] 409 / 3e-139 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G054200 [exp] 407 / 1e-138 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 398 / 3e-135 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G066200 [exp] 395 / 8e-134 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.016G127900 [exp] 332 / 2e-109 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 329 / 2e-108 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 312 / 1e-103 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.006G232700 [exp] 301 / 3e-99 AT5G26010 318 / 7e-108 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10033708 pacid=23143324 polypeptide=Lus10033708 locus=Lus10033708.g ID=Lus10033708.BGIv1.0 annot-version=v1.0 ATGGGTGCTTGTTTTTCAACCAGCAGTAGCAGTACTTTTAGCAATAGGAGCAATGGAGACAGAGGTCGTGTGGGATTTCGGTTATTCGGGCAGAAGAGTG GCAAAGGGACATTCTTCGATCATACTATGGGGCTGCAGCATCTAGCCTCCATACCAAACAGGATCTTTGCCAATGGAAAGAGCAGAAGTTCATGTATCTT TACGCAGCAAGGACGTAAAGGCATAAATCAGGATGCTATGATTGTATGGGAGGATTTCATGTCGGAAGGTGTGACCTTTTGTGGAGTGTTTGACGGCCAT GGACCGCACGGCCATCTCGTTGCCAGGAAGGTCAGGGACAGCTTGCCTGTGAAATTGATGTCTTTCTTGAACTCTCATCAGTCAGGATGTGAAGATGGAT CTGGATGTGAAGCAGACGTTGGGAATGACGGTTCAGCTGAAGAAAAATTGGATTCCTTGTGGAGAGAAGCGTTTATGAAGACTTATAAGTCAATGGATAA AGAGCTCAAATCTCATCCCAAACTGGACTGCTTCTGCAGTGGGAGCACTGCTGTCACAATAGTAAAACAGGGATCGAATCTGTTCATGGGCTATATTGGC GACTCTCGTGCAATCATGGGTTCGAAAGACAGCAACGGTTCCATGTTGGCTATCCAGTTGACCGTTGACCTGAAACCTGATCTGCCTAGGGAGGCTGAGC GGATCAAGAGGTGTAAAGGTAGAGTCTTTGCTTTGCAAGACGAGCCGGAAGTCTCAAGAGTGTGGTTGCCATTTGATGATGCTCCTGGACTAGCAATGGC CAGAGCATTTGGAGACTTCTGCTTGAAGGAGTATGGCGTGATATCCATACCGGAGTTCTCTCACCGGCTCCTCACTGAGAGAGATCAGTTCATTGTTCTC GCTTCCGATGGGGTCTGGGACGTGTTAAGCAACGAAGAGGTTGTGGAGATTGTGTCCTCAGCTCCAGCACGGTCATCAGCTGCGAGGCTACTAATCGATG CTGCTTCGAAGCAATGGAAGCTCAAGTACCCAACTTCCAAGATGGATGACTGTGCAGTGGTTTGCTTGTATCTGGATGGAAAAATGGATGCAGAATCGGA CTGCGAAGGGGTTCAAGCCTTTTCATCCGCCAACTCTGCAGCTCTCCACAGCAGTAATGCTGCACTAGCAACCACTGAATCGGATGATGTGCAGCAGGAC GACACGGAGCCTAGTCTGCAGAGGAACGTTACGGTGAGATCTTCGCTGGGGATGATGTCAGGCTCAGCGGTGGTTGAAGATGAAGGTTGGACAGGGTTGG AAGGTGTAACGAGAGTGAACTCGCTCGTTCAACTCCCTAGATTTTCGAACGAAAGACCCACCAGCTCATAG
AA sequence Show only first row Show all	>Lus10033708 pacid=23143324 polypeptide=Lus10033708 locus=Lus10033708.g ID=Lus10033708.BGIv1.0 annot-version=v1.0 MGACFSTSSSSTFSNRSNGDRGRVGFRLFGQKSGKGTFFDHTMGLQHLASIPNRIFANGKSRSSCIFTQQGRKGINQDAMIVWEDFMSEGVTFCGVFDGH GPHGHLVARKVRDSLPVKLMSFLNSHQSGCEDGSGCEADVGNDGSAEEKLDSLWREAFMKTYKSMDKELKSHPKLDCFCSGSTAVTIVKQGSNLFMGYIG DSRAIMGSKDSNGSMLAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVSRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTERDQFIVL ASDGVWDVLSNEEVVEIVSSAPARSSAARLLIDAASKQWKLKYPTSKMDDCAVVCLYLDGKMDAESDCEGVQAFSSANSAALHSSNAALATTESDDVQQD DTEPSLQRNVTVRSSLGMMSGSAVVEDEGWTGLEGVTRVNSLVQLPRFSNERPTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	0	1
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	1.0	0.9702
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	3.2	0.9498
AT3G52230			unknown protein		Lus10028838 [exp]	3.5	0.9358
AT3G56200			Transmembrane amino acid trans...		Lus10042864 [exp]	5.0	0.9472
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	7.3	0.9319
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10021610 [exp]	7.9	0.9286
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Lus10027021 [exp]	8.5	0.9402
AT1G74790			catalytics (.1)		Lus10033116 [exp]	10.0	0.9363
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10000711 [exp]	10.2	0.9336
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	10.2	0.9351

Compare expression of checked genes

Lus10033708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.