Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038304 [exp] 182 / 2e-58 ND 43 / 1e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046100 [exp] 183 / 3e-57 AT1G16250 89 / 3e-19 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G037400 [exp] 176 / 3e-54 AT1G16250 93 / 7e-21 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033709 pacid=23143262 polypeptide=Lus10033709 locus=Lus10033709.g ID=Lus10033709.BGIv1.0 annot-version=v1.0 ATGGAGAGGTGCTCAGCTGACGTGTACAACCCAAAAACGGACACATGGACAGTACTCCAACGCATGTGGCAGCTGGACGTGCCGCCGAACCAAATCGTGC CGGTCAACGACAACCTGTTCAGCTCGGGGGACTGCCTGAACCCCTGGAAAGGCCACATCGAGGCGTATGACAAGGATCTCAACTTCTGGAACGTGGTCGA CGACTCGCGGCTGCGGACGCTCTCGTGTCCGGTCTACGCTGCAGCTTACTCGGATGCCAGCTGTGCAAGCGCTGCTGAGGAGCGTAGGATGTATCTCACG ATCGCTCCCATTGGGACGCAGCTGTACTTCTTGGTGGGGTATCGGGTGCCAGGTGAGACGACGAGGGCCACGTCAATTGTACATGTGTTCGACACGAAGA TCGATGGGGATGGTGGTGGGTGGAAGAGCTTTGAGCCCGTGGAGGATGATGGAAGGAAAGAGCTGTGTAGCCATTGTTGTGTCGTAACTTTCTGA
AA sequence Show only first row Show all	>Lus10033709 pacid=23143262 polypeptide=Lus10033709 locus=Lus10033709.g ID=Lus10033709.BGIv1.0 annot-version=v1.0 MERCSADVYNPKTDTWTVLQRMWQLDVPPNQIVPVNDNLFSSGDCLNPWKGHIEAYDKDLNFWNVVDDSRLRTLSCPVYAAAYSDASCASAAEERRMYLT IAPIGTQLYFLVGYRVPGETTRATSIVHVFDTKIDGDGGGWKSFEPVEDDGRKELCSHCCVVTF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033709 [exp]	0	1
AT1G06645			2-oxoglutarate (2OG) and Fe(II...		Lus10033876 [exp]	5.6	0.7752
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	7.5	0.7378
					Lus10010117 [exp]	8.7	0.7378
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	9.7	0.7378
					Lus10005187 [exp]	10.7	0.7378
					Lus10002152 [exp]	11.5	0.7378
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	12.3	0.7378
					Lus10039750 [exp]	13.1	0.7370
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009399 [exp]	13.8	0.7722
					Lus10035708 [exp]	13.9	0.6982

Compare expression of checked genes

Lus10033709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.