Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71840 474 / 8e-161 transducin family protein / WD-40 repeat family protein (.1) AT2G20860 339 / 7e-109 LIP1 lipoic acid synthase 1 (.1) AT5G08415 212 / 4e-61 Radical SAM superfamily protein (.1) AT3G49660 108 / 1e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 100 / 2e-22 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 101 / 4e-22 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT3G16650 94 / 7e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 90 / 4e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 91 / 5e-19 WD-40 repeat family protein / notchless protein, putative (.1) AT5G67320 90 / 3e-18 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031629 [exp] 773 / 0 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10032994 [exp] 635 / 0 AT1G71840 415 / 8e-145 transducin family protein / WD-40 repeat family protein (.1) Lus10031630 [exp] 377 / 1e-123 AT2G20860 581 / 0.0 lipoic acid synthase 1 (.1) Lus10041005 [exp] 208 / 7e-60 AT5G08415 553 / 0.0 Radical SAM superfamily protein (.1) Lus10013451 [exp] 208 / 2e-59 AT5G08415 536 / 0.0 Radical SAM superfamily protein (.1) Lus10014674 [exp] 108 / 1e-25 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 107 / 3e-25 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 103 / 2e-22 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 102 / 4e-22 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087200 [exp] 501 / 3e-171 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.013G116900 [exp] 474 / 1e-160 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.007G078400 [exp] 348 / 4e-112 AT2G20860 583 / 0.0 lipoic acid synthase 1 (.1) Potri.005G086200 [exp] 338 / 2e-108 AT2G20860 582 / 0.0 lipoic acid synthase 1 (.1) Potri.019G102700 [exp] 209 / 4e-60 AT5G08415 545 / 0.0 Radical SAM superfamily protein (.1) Potri.013G136000 [exp] 209 / 8e-60 AT5G08415 566 / 0.0 Radical SAM superfamily protein (.1) Potri.002G051900 [exp] 110 / 4e-26 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 102 / 3e-23 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 99 / 2e-22 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 99 / 4e-21 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily
Representative CDS sequence Show only first row Show all	>Lus10033710 pacid=23143419 polypeptide=Lus10033710 locus=Lus10033710.g ID=Lus10033710.BGIv1.0 annot-version=v1.0 ATGGGCATTTCTGTCTATTCAATGATTTTGGTGAATAACCACTGCCAATCAATCGCGCAGCTGACTTCCAGCATCGCTCGTAAACCCCAGCGGCGGCGGC TATTATCCGGTAACTTTTACGGCCTGAATATCTCGGCAGAAGTTTACGACTCTTGGTTTGGCAACCTCCTAGACTACGAGGTGTGCAAAATCACACCTTT GATGCTGATGCCGGCATCCAAGTGTGCAAAATCGCCACTTTGGGAAAATCACTCCTTTCATGCTGATGCCGACATCAAGGTGTGCAAAATCACACCTTTG ATGCGGATGCCGGCTGTACAATTGCTCAACTGGGAATGTTTGAACAAGGTTCTATTGTATTGGCTTTACTTAATCAATCGTCGGGGGGTTGTTAACTTGG TTCAGTTATTCAGGAAAATGCAGAGGGATGGTGATAGCAGTGATGATGGAGAGGTCTACATCGATGAATCAGATACTCTCCATGAGGTTATCCTTGATGA TGAAGATCTTCCTGATGTCAATGACGAGGATGATGAACAAGCTGGCTATGATGAGGATGATTCCATGCACACTTTCACTGGCCATACATCTGAACTTTAC GCAGTTGCCTGCAATCCAACAGACCCATTACTGGTTGCAACCGGGGGTGGTGATGACAGAGGATTTCTATGGAAGTTAGGACAAGGAGATTGGGCTGCTG AATTCGGAGGTCATAAGGATTCCGTTACTAGCTTAGCATTTAGTAGCGATGGACAGTTTCTAGCATCTGCGGGACTTGATTCTGTAGTTAATGTCTGGGA TGTGTCTGGAAATCTTAAATGTATGCTTGAAGGCCCTGTAGTGGTTGAGCAGACAGAGGAAGAAGCCGGTCCTTCTGCTGGCTTTGAGTGGGTCAAGTGG CATCCTAGAGGGCATGTAGTCTTGGCTGGTTCAAATGATTGCAGTGCTTGGATGTGGAATGCCGATAGAGGTGCTGTCCTTGGTGTATTTTATGGTCATG GTGGACCTGTTACCTGTGGAGATTTCACCCCTGATGGCAAAACTATCTGCACTGGTTCTGCTGATATGACTTTGAGAATTTGGAATCCTAGAACTGGGGA GAGCACACATGTTGTAAGAGGTCATCCATATCATACTGCAGGATTAACTTGCTTGGCGATTACCTCTGATTCAACTCTTGCTCTTACTGGTTCTATGGAT GGCTCTGTGAAAATTGTTAACATAGTGACTGGAAAGGTGGTCAGTACTTTGTCTAGTCATTCAGATACAGTCTTATGCATCTCTCTGTCAAAATCATCAA GCTTTCCTTGGGCGGCAACTGGAGGCAGGGATCAACAACTTGTTATATGGGATCTGGAACATTCAGCTGCTCGCAACATATGCAATCACGAGAGTGAAGT AACGTGCTTAACATGGATAGGCGTTTCGAGGTACATAGCTGCAGGATGTGCAGATGGCGACATCGTGATATGGGATGGTCGATCCGGAGAAAAGGTGAAA ACTTTCAAGGGGCATGGTGAATGCATACAGTCCTTGTCAGTGAACTCGAATCAAGAGTTTTTGGTTTCAGCCTCGGAAGATGGCACTGCCAGGGTGTTTG AGATTGCAGAGTTCAAGTTTTGCAATGTGAAGACGTCGAGAACTCCTCCTCCGCCTGATCCGAACGAGCCGGGAAATGTAGCTGAGGCTATTGCGTCGTG GGGATTGGATTATGTTGTGATTACCAGTGTTGATCGTGACGATTTGGATGATCAAGGGAGCAGCCATTTCGCTGAAACTGTGCAGAAGTTGAAGGCTTTG AAGCCTAACATGCTTATTGAAGCATTGGTTCCTGATTTCCGAGGCAACTCGGACTGTGTCGAGAAGGTGGCAACATCAGGGCTGGATGTACTTGCCCACA ACATCGAGACAGTGGAAGAGCTTCAAGGAGCGGTTAGGGATAAACGTGCTAATTTCAAGCAATCTATAGACGTTCTGAAGATGGCTAAAGAATACGCGCC TGCCGGAACGCTTACCAAGACATCAGTAATGCTGGGATGCGGTGAAACTCCCGAACAGGTTGTGAAAACTATGGAGAAGGTGAGAGCTGCAGGTGTTGAC GTGATGACATTCGGTCAGTATATGAGACCATCCAAGCGCCATATGCCGGTTTCTGAGTACATCACCCCCGAGGCCTTCGACAAGTACCGAGTTCTCGGCA TGGACATGGAGATCTTAAGTGATGGCCTAGGTTGGCCAACTCCGGTTCCACCATTGAGTGTGATGGTGAGTAGGGAGGCCAGTAGAGTCAGTTTGCACAC GAAGCTTTTTCACACCACGATATCAAGCGAGCTTTATCCCCTCGACAATCACGCGGAGTTCTGCGGGCATATTAGTGCATTCACCCTAATTCCACTCATA GGTAGCTTTCGAAATGATTCCCTGTCGTCTCGAATTACTCCCCCATGCGCAGCTGACATGTTATTAGTGTACAGGCATCTGTGGGAGTTAAGGATAAACC AACCCTCCCCATCCTACCACCACCCGACCAACTGGGTCTCTCGGGCAACTTCTCGGCCCGGTTGA
AA sequence Show only first row Show all	>Lus10033710 pacid=23143419 polypeptide=Lus10033710 locus=Lus10033710.g ID=Lus10033710.BGIv1.0 annot-version=v1.0 MGISVYSMILVNNHCQSIAQLTSSIARKPQRRRLLSGNFYGLNISAEVYDSWFGNLLDYEVCKITPLMLMPASKCAKSPLWENHSFHADADIKVCKITPL MRMPAVQLLNWECLNKVLLYWLYLINRRGVVNLVQLFRKMQRDGDSSDDGEVYIDESDTLHEVILDDEDLPDVNDEDDEQAGYDEDDSMHTFTGHTSELY AVACNPTDPLLVATGGGDDRGFLWKLGQGDWAAEFGGHKDSVTSLAFSSDGQFLASAGLDSVVNVWDVSGNLKCMLEGPVVVEQTEEEAGPSAGFEWVKW HPRGHVVLAGSNDCSAWMWNADRGAVLGVFYGHGGPVTCGDFTPDGKTICTGSADMTLRIWNPRTGESTHVVRGHPYHTAGLTCLAITSDSTLALTGSMD GSVKIVNIVTGKVVSTLSSHSDTVLCISLSKSSSFPWAATGGRDQQLVIWDLEHSAARNICNHESEVTCLTWIGVSRYIAAGCADGDIVIWDGRSGEKVK TFKGHGECIQSLSVNSNQEFLVSASEDGTARVFEIAEFKFCNVKTSRTPPPPDPNEPGNVAEAIASWGLDYVVITSVDRDDLDDQGSSHFAETVQKLKAL KPNMLIEALVPDFRGNSDCVEKVATSGLDVLAHNIETVEELQGAVRDKRANFKQSIDVLKMAKEYAPAGTLTKTSVMLGCGETPEQVVKTMEKVRAAGVD VMTFGQYMRPSKRHMPVSEYITPEAFDKYRVLGMDMEILSDGLGWPTPVPPLSVMVSREASRVSLHTKLFHTTISSELYPLDNHAEFCGHISAFTLIPLI GSFRNDSLSSRITPPCAADMLLVYRHLWELRINQPSPSYHHPTNWVSRATSRPG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71840			transducin family protein / WD...		Lus10033710 [exp]	0	1
AT1G61390			S-locus lectin protein kinase ...		Lus10018407 [exp]	5.5	0.7882
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	7.9	0.8329
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	9.5	0.8146
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	11.0	0.8261
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	14.6	0.8067
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10018018 [exp]	15.6	0.8015
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	15.7	0.8018
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	15.9	0.7817
AT5G03990			unknown protein		Lus10016362 [exp]	18.0	0.8046
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	19.0	0.8044

Compare expression of checked genes

Lus10033710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.