Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03390 682 / 0 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 634 / 0 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G22130 372 / 4e-120 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G11130 361 / 3e-113 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT1G53730 313 / 7e-96 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 310 / 4e-95 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G78980 298 / 3e-90 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 261 / 7e-77 SRF4 STRUBBELIG-receptor family 4 (.1) AT3G58690 237 / 8e-71 Protein kinase superfamily protein (.1) AT2G30740 230 / 1e-68 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031628 [exp] 1135 / 0 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10039795 [exp] 798 / 0 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018563 [exp] 500 / 6e-168 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10011223 [exp] 499 / 1e-167 AT4G03390 591 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018459 [exp] 384 / 3e-123 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10015549 [exp] 365 / 1e-113 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 344 / 1e-107 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10003926 [exp] 326 / 1e-100 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 322 / 8e-100 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103900 [exp] 766 / 0 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 566 / 0 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 499 / 2e-166 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 399 / 5e-128 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G010500 [exp] 366 / 9e-116 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.004G005301 [exp] 364 / 3e-115 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.001G161600 [exp] 329 / 6e-102 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 323 / 1e-99 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.007G002600 [exp] 304 / 8e-93 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.014G001200 [exp] 302 / 6e-92 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033711 pacid=23143327 polypeptide=Lus10033711 locus=Lus10033711.g ID=Lus10033711.BGIv1.0 annot-version=v1.0 ATGGGACTTAAGAGATCTGGCTCCTCAAGTTGGGAGATCTGTACAAAGTTCCTTTTGGGGTTCGCTTTAATCTGGACAGCTCAAGTTTCACTTGCAGCTA CCAATAACAATGATGTTGCTGCAATTAATAGCTTATATGCTTCACTGGGAAGTCCGGTGTTGCCCGGATGGGTTGCCAGCGCAGGCGACCCGTGTGGGGA AGCTTGGCAAGGTGTTCAGTGTAATGCTTCAGAGATACAGTCCATAGATCTCAATGGAGCTAATCTTGGTGGTGCATTGGGTACTACTTTGGGATCATTT ACTTCCATCAAATCCATTGATCTAAGCAACAACCAGATCGGTGGTACTATTCCGTCAAGTCTGCCGCCTACATTGCAGACACTTTCCCTTTCGGGTAATA ATCTCACAGGAAGCATTCCAGATACTCTATCCTCTTTAACTCTCTTGACAGACATATCTCTGAACCAGAACTCGTTGAGTGGAGAGATACCGGACTCTTT CCAATCCCTTACAGGATTGATCAATCTAGACTTGTCAGGCAACAATTTGAGTGGAATACTTCCTCCTTCTTTCACTAACTTGGTTCAGCTAACGACATTG CATTTGCAGGATAACACGTTGTCTGGCACCCTTGATGTTCTCCAAGACCTCCCACTCCAAGATTTGAACATTGAAAATAACCTGTTCTCTGGATCCATAC CCGACAAGCTGCTTAGTATTCCAACATTCAACAAAGATGGAAACTCCTTCAATGAGACGATTGCTCCATTACCATCACCGTCATCTCCAACAATACTGCC AGCCACACCATTGCCTCCTGGGACACCAATACCACCACCGCCACCAACGACATCATCAACAACATCACCTCCTTCCGGAAAAACGCCAGGGAAACAGGCA AAGGGGCCATCTTCACTAGAGCAATCATCAAGTGGAAAGAAACCTGTTAAGAAAATAGTTTGGATATCAATTGCTGGGGCAGCGGTGTTTATAATTTTTG TGTTGGCATGCTGCTTGTTCATACCTAAGTGTTGTAGAAGAAGTGAAGAAGGTGCTCGATATTCGAAACGGCATCAAGTTGGCAACAGAGAACAACTTCC AAGTGACAACAATAATAATTCTTTGCTCCTGCCAACTAGTCAACCACAAGTCAAGCAAGGTAATCATTTGTTAACAGATAAAAAGGCGAGTATGCTACCT GCAAAGAAAGAGCAACCGGTGCCACAAAAGCCACCTGAAAGAAAACTCCCCACTTCGGCAGTAGCAGCAGCAATACCGAAGAAGGACGACTATGCAATGG ACTTGAGCAGACTAGACTCGATGGATATAATGCATATGCCGCCTCCTCCACCTCCGCCTCCCCCACCGCCTTGCGATAAGTACGACTTTACACCACTCCC ACACTCTCGGACTTTCACCATTGCATCTCTTCAGCAATACACAAACAGCTTTTCTCAAGAGAACCTTGTAGGAGACGGCATGCTGGGAACTGTCTATAGG GCAGAGCGTCCGAATGGAAAGCTTCTGGCAGTCAAGAAACTGGACAGGAGAGCTTCGACACAGCGTGATGATGAGTTTCTTGATATGGTCAACAACATCG ACCGGATTCGACATGCTAATGTTGTTGAGCTCATGGGATACTGTGCTGAGCATGATCAGAGGCTTCTGATTTATGAGTACTGCAGCAATGGTACCTTGCA GGATATGCTACACACGGATGACGAATTGAAGGATAATCTCTCATGGAACACCCGCATTCGGATGGCACTAGGAGCTGCTAGAGCTTTAGAATATTTGCAC GACGTTTGCCAGCCGCCAGTCATACACAGAAACTTCAAGTCTGCTAATATTCTCCTCGATGATGACCTTGATGTCCGAGTCGCCGATTGTGGGCTCTTAA CAGCGTATGGGTACGGGGCTCCGGAGTTCGAGTCGGGAATTTACACCACTCAGAGCGATGTCTATAGCTTCGGTGTTGTAATGTTGGAACTTTTGACTGG CCGGAAATCCTTCGACAAGTCACGTAACCGTGGTGAACAGTTTCTTGTGAGGTGGGCGATCCCTCAGCTACACGACATCGATGCAATATCGAGGATGGTG GATCCTTCTCTCCACGGACAATACATTGCTAAGTCACTATCCAACTTTGCTGATATCATTTCTAGATGTGTCCAGTCTGAGCCTGAATTCAGGCCACAAA TGTCTGAGGTTGTTCAGGATCTAACCAACATGATCAGAAGGGAACGCCCCAGCAACGAATCCATCGGAGAATGA
AA sequence Show only first row Show all	>Lus10033711 pacid=23143327 polypeptide=Lus10033711 locus=Lus10033711.g ID=Lus10033711.BGIv1.0 annot-version=v1.0 MGLKRSGSSSWEICTKFLLGFALIWTAQVSLAATNNNDVAAINSLYASLGSPVLPGWVASAGDPCGEAWQGVQCNASEIQSIDLNGANLGGALGTTLGSF TSIKSIDLSNNQIGGTIPSSLPPTLQTLSLSGNNLTGSIPDTLSSLTLLTDISLNQNSLSGEIPDSFQSLTGLINLDLSGNNLSGILPPSFTNLVQLTTL HLQDNTLSGTLDVLQDLPLQDLNIENNLFSGSIPDKLLSIPTFNKDGNSFNETIAPLPSPSSPTILPATPLPPGTPIPPPPPTTSSTTSPPSGKTPGKQA KGPSSLEQSSSGKKPVKKIVWISIAGAAVFIIFVLACCLFIPKCCRRSEEGARYSKRHQVGNREQLPSDNNNNSLLLPTSQPQVKQGNHLLTDKKASMLP AKKEQPVPQKPPERKLPTSAVAAAIPKKDDYAMDLSRLDSMDIMHMPPPPPPPPPPPCDKYDFTPLPHSRTFTIASLQQYTNSFSQENLVGDGMLGTVYR AERPNGKLLAVKKLDRRASTQRDDEFLDMVNNIDRIRHANVVELMGYCAEHDQRLLIYEYCSNGTLQDMLHTDDELKDNLSWNTRIRMALGAARALEYLH DVCQPPVIHRNFKSANILLDDDLDVRVADCGLLTAYGYGAPEFESGIYTTQSDVYSFGVVMLELLTGRKSFDKSRNRGEQFLVRWAIPQLHDIDAISRMV DPSLHGQYIAKSLSNFADIISRCVQSEPEFRPQMSEVVQDLTNMIRRERPSNESIGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10033711 [exp]	0	1
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10043401 [exp]	1.7	0.8721
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	3.2	0.8794
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	3.2	0.8869
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	4.0	0.8697
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10017889 [exp]	4.9	0.8408
AT1G45207			Remorin family protein (.2)		Lus10010227 [exp]	8.5	0.8105
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	9.2	0.8656
AT1G74860			unknown protein		Lus10033128 [exp]	9.8	0.7625
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	9.9	0.8607
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	11.6	0.8661

Compare expression of checked genes

Lus10033711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.