Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20840 362 / 1e-126 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G03550 348 / 3e-121 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G61250 347 / 2e-120 SC3 secretory carrier 3 (.1.2) AT1G11180 327 / 2e-112 Secretory carrier membrane protein (SCAMP) family protein (.1), Secretory carrier membrane protein (SCAMP) family protein (.2) AT1G32050 276 / 4e-93 SCAMP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031627 [exp] 534 / 0 AT2G20840 406 / 2e-143 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10039794 [exp] 471 / 7e-169 AT2G20840 427 / 1e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10018562 [exp] 468 / 1e-167 AT2G20840 429 / 1e-152 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10018455 [exp] 333 / 5e-115 AT1G61250 440 / 2e-157 secretory carrier 3 (.1.2) Lus10038302 [exp] 330 / 1e-113 AT1G61250 442 / 3e-158 secretory carrier 3 (.1.2) Lus10011229 [exp] 323 / 5e-111 AT1G61250 436 / 1e-155 secretory carrier 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G144700 [exp] 403 / 2e-142 AT2G20840 438 / 1e-156 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.019G104000 [exp] 402 / 5e-142 AT2G20840 426 / 2e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.011G045100 [exp] 367 / 4e-128 AT1G61250 397 / 4e-140 secretory carrier 3 (.1.2) Potri.004G036600 [exp] 360 / 1e-125 AT1G61250 357 / 3e-124 secretory carrier 3 (.1.2) Potri.001G134100 [exp] 288 / 1e-97 AT1G32050 399 / 8e-142 SCAMP family protein (.1) Potri.003G099300 [exp] 286 / 6e-97 AT1G32050 393 / 2e-139 SCAMP family protein (.1) Potri.004G036700 [exp] 162 / 3e-49 AT1G61250 158 / 3e-48 secretory carrier 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04144 [flax] [poplar] SCAMP SCAMP family
Representative CDS sequence Show only first row Show all	>Lus10033712 pacid=23143538 polypeptide=Lus10033712 locus=Lus10033712.g ID=Lus10033712.BGIv1.0 annot-version=v1.0 ATGAGTCGCTACGATTCCAACCCCTTTGAAGAAGAAGACGTCAATCCTTTTGCGGATCAAGCGAAGGGAAGATCATCTGGGAAATCCAATTACGGTGGAG GAGGCGCCTTCTACATGCCGAATCCAGGAGTTGCCCCTTCATCTTCGAGACTTGCACCTCTTGCTCCAGAGCCCTACGATCGTAGTGCAACAGCTGATAT TCCGTTGGATAATGCAAATGATCATCTTAAAGCTAAGGAGAAGGAGCTTCAAGCTAAAGAAGCTGAATTGAAGAAGAGGGAGCAGGAATTAAAACGAAAA GAAGATGCGATAAAACGAGCTGGAATTGTGATTGAAGAGAACAACTTTCCACCATTTTTCCCTCTCATCCATCATGATATTCCGAATGAGATACCGATCC ATCTACAGAAGATACAATACGTTGCTTTCACAACTTTGTTAGGTATCGTATTGTGTCTTCTGTGGAACGTCGTTGCAGTTACTGCAGCCTGGATTAAAGG AGAAGGTCCAACTATTTTCATTTTCGCTGTTATCTACTTCGTAACTGGGGTTCCCGGAGCCTATGTTTTGTGGTATCGCCCCCTCTACCGTGCAATGAGG ACTGATAGTGCTTTGAAATTCGGGTGGTTCTTTCTGTCCTACTCGTTTCACATTGGTTTTTGCGTCTTGGCTGCTATTGCTCCGCCTATTATCTTCAAGG GGAAGTCTCTCGCGGGAGTTTTGCCTGCCATTGATCTTCTTGGCACCAATGCTCTAGTCGGGGTATTCTACTTCATCGGGTTTGCGTGTTTCACAGTCGA ATCCCTTCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCAGAGGAAGTGGCAAAGCTGCAGAGATGAAACGTCAGGCCATGATGGCTGCACTA TGA
AA sequence Show only first row Show all	>Lus10033712 pacid=23143538 polypeptide=Lus10033712 locus=Lus10033712.g ID=Lus10033712.BGIv1.0 annot-version=v1.0 MSRYDSNPFEEEDVNPFADQAKGRSSGKSNYGGGGAFYMPNPGVAPSSSRLAPLAPEPYDRSATADIPLDNANDHLKAKEKELQAKEAELKKREQELKRK EDAIKRAGIVIEENNFPPFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGIVLCLLWNVVAVTAAWIKGEGPTIFIFAVIYFVTGVPGAYVLWYRPLYRAMR TDSALKFGWFFLSYSFHIGFCVLAAIAPPIIFKGKSLAGVLPAIDLLGTNALVGVFYFIGFACFTVESLLSIWVIQQVYMYFRGSGKAAEMKRQAMMAAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20840			Secretory carrier membrane pro...		Lus10033712 [exp]	0	1
AT1G30800			Fasciclin-like arabinogalactan...		Lus10038414 [exp]	19.9	0.7289
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	22.8	0.7317
					Lus10037930 [exp]	25.8	0.7047
AT1G11340			S-locus lectin protein kinase ...		Lus10030768 [exp]	26.0	0.7269
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10010108 [exp]	39.2	0.6808
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10027726 [exp]	49.1	0.7033
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	52.1	0.6999
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10013224 [exp]	53.5	0.6890
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10000101 [exp]	55.6	0.6943
AT1G02310		MAN1	endo-beta-mannanase 1, Glycosy...		Lus10010089 [exp]	56.0	0.6596

Compare expression of checked genes

Lus10033712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.