Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03540 725 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G02010 369 / 2e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 361 / 6e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 353 / 2e-111 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 352 / 9e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 341 / 1e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 337 / 3e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 332 / 7e-105 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 332 / 3e-104 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G03580 334 / 5e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013991 [exp] 372 / 2e-117 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 371 / 4e-117 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 366 / 9e-117 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 362 / 3e-115 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 364 / 1e-113 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 354 / 6e-112 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 350 / 1e-110 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 345 / 2e-109 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 342 / 6e-109 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145000 [exp] 875 / 0 AT1G03540 721 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G067500 [exp] 400 / 2e-127 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 376 / 6e-122 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 383 / 1e-120 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 374 / 1e-119 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 367 / 5e-117 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 369 / 3e-116 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G155000 [exp] 362 / 9e-116 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G151200 [exp] 362 / 9e-116 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 356 / 9e-114 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033713 pacid=23143334 polypeptide=Lus10033713 locus=Lus10033713.g ID=Lus10033713.BGIv1.0 annot-version=v1.0 ATGAAGCATTTCTTCTCTATAACCCGCCATTGGAGCTCTGTACCTTCTCTAAATCATGTCAAAGCCACTCCAACCCATTTTCAAACCAAGGAATCGAAGC TCCTCGAGTTCTGCAGATCCGGATCCCTCTTTCCCGCGCTCCACCTTCTCAACTCCATCGACTGGAGATCCTTCTCCAACAAACCTCTACTCTTCGCTTC TCTACTGCAGACCAGCACGAAAGCTTCTTCATTCAGCCACGGGATCCAGATTCACGCCCACGTCGTCAAATCCGGCCTGGAAACCGACCGATTCGTCGGG AATAGCTTGCTGGCGCTTTACTTCAAGCTGGGATCCGACTTCGTCGAGACGAGGAGAGTCTTCGACGGGTTGAATCTCAAAGACGTCATTTCCTGGACGT CGATGATAACCGGGTATGTGAAAGTGGATAAACCTAGAAGCTCGATTCAGCTGTTCTTTGAAATGGTGCATTCGGACGTTGAGCCAAATGCCTTCACTTT ATCAGCGGTGGTGAAAGCGTGTTCGGATCTTGGAGACTTGCTCCTCGGTAGTGCGTTCCACGGAATTGTTTTCGCTCGCGGATTCGATTCGAACAATGTG ATTTCCAGCGCTTTGATTGATATGTATGGAAGGAATTTTGCAGTCCATGATGCACGCCAACTGTTCGACGAATTGCCTGAACCAGACGCCATCTGCTGGA CGTCTGTGATTTCAGGCTTTACGAGGAATGATATGTTCAGAGAAGCCTTATCGTTCTTCAATTCGATGCAAATGAAGCACAATTTCGGATTGGATGCGTT TACATTCGGTACGGTTTTGACAGCATGCGGCAACTTGGGAAGAACAAAGCAAGGTAAAGAAGTTCATGCCAAGGTTGTTACTTCCGGTTCCGGTGATAAC GTCGTAGTCCAAAGTAGTCTCGTGGACATGTACGGGAAATGTGGCCTGCTCGAAGATTCTCAGCAAGTTTTCGATAGGATGAGTACGAAAAACTCTGTTT CGTGGTCTGCGTTGCTAGGTGGCTACTGTCAAAATGGTGACTTGAAATCCGTTGTTAGGATATTCAGAGAGATGGGAAAGGATGATCTTTACAGCTTCGG GACTGTTCTTCGAGCTTGTGCCGGTTTGGCAGCGATAAAGCAAGGTAAAGAGATTCATTGCCAGTACGTAAGAAGGGGAGGCTGGAGAGATGTAATTGTG GAGTCAGCTTTAGTTGATCTCTATGCAAAATGTGGCTGTATTGATTTTGCTTATAGGGTATTCGAGGAAATGCCGGTTCGGAATGTGATCACTTGGAATG CTATGATTAGCGGATTTGCACAGAACGGAAGGATTGATCAAGCTTTAGCCTTATTCGACGATATGACCGAGAAAAGTGTGAGCCCTGATTACATAACCTT CATAGGAGTTCTTTTCGCTTGCAATCATTCTGGTTTGGTTAATCAAGGGAAGAAGCATTTCGAGTCTATGGTATCCGTATACGGAATTAGACCCGGTATC GAGCATTATAACTGCATGATCGATCTTCTGGGTCGTGCTGGGTTGATAGAAGAAGCTGAGAGTTTGTTAAAGAATGCAGATTGCAGAGACGATTTTTCGA CTCTTTGGGCCGTTCTCCTTGGTGCATGTGCCGCTACTTCTACAAACCCTGGGACTGCGGAGCGCATTGCGAAGAGGACTATCGAATTGAAACCCGATTA CCATCTTAGTTACGTTTATCTAGCTAATGTTTATAGAGGTGTCGGTCGTTGGGAGGATGCGGATAACATTCGGAGGTTGATGGAGGAGAGACGGGTTAAA AAGGTTACTGCGAAAAGCTGGAGTTAG
AA sequence Show only first row Show all	>Lus10033713 pacid=23143334 polypeptide=Lus10033713 locus=Lus10033713.g ID=Lus10033713.BGIv1.0 annot-version=v1.0 MKHFFSITRHWSSVPSLNHVKATPTHFQTKESKLLEFCRSGSLFPALHLLNSIDWRSFSNKPLLFASLLQTSTKASSFSHGIQIHAHVVKSGLETDRFVG NSLLALYFKLGSDFVETRRVFDGLNLKDVISWTSMITGYVKVDKPRSSIQLFFEMVHSDVEPNAFTLSAVVKACSDLGDLLLGSAFHGIVFARGFDSNNV ISSALIDMYGRNFAVHDARQLFDELPEPDAICWTSVISGFTRNDMFREALSFFNSMQMKHNFGLDAFTFGTVLTACGNLGRTKQGKEVHAKVVTSGSGDN VVVQSSLVDMYGKCGLLEDSQQVFDRMSTKNSVSWSALLGGYCQNGDLKSVVRIFREMGKDDLYSFGTVLRACAGLAAIKQGKEIHCQYVRRGGWRDVIV ESALVDLYAKCGCIDFAYRVFEEMPVRNVITWNAMISGFAQNGRIDQALALFDDMTEKSVSPDYITFIGVLFACNHSGLVNQGKKHFESMVSVYGIRPGI EHYNCMIDLLGRAGLIEEAESLLKNADCRDDFSTLWAVLLGACAATSTNPGTAERIAKRTIELKPDYHLSYVYLANVYRGVGRWEDADNIRRLMEERRVK KVTAKSWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	0	1
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10028593 [exp]	1.0	0.9092
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10018492 [exp]	1.7	0.8697
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	2.4	0.9081
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	3.5	0.8639
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	5.0	0.8574
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	5.3	0.8543
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	6.2	0.8198
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10002092 [exp]	6.7	0.8148
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	8.0	0.8431
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	8.8	0.8550

Compare expression of checked genes

Lus10033713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.