Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03340 658 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 658 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G39990 465 / 2e-162 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 454 / 1e-158 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G15050 449 / 2e-156 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 428 / 3e-148 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 414 / 8e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 397 / 1e-136 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 365 / 6e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 347 / 7e-117 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031626 [exp] 862 / 0 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 465 / 2e-162 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 464 / 6e-162 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 448 / 9e-156 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 446 / 5e-155 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 433 / 5e-150 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 432 / 6e-150 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10020316 [exp] 405 / 4e-139 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005676 [exp] 397 / 8e-135 AT3G03690 454 / 3e-158 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145500 [exp] 711 / 0 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 672 / 0 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 461 / 3e-161 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 450 / 1e-156 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 447 / 6e-156 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 443 / 4e-154 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.013G066200 [exp] 440 / 4e-153 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G003300 [exp] 422 / 8e-146 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 420 / 1e-144 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 363 / 6e-123 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10033714 pacid=23143388 polypeptide=Lus10033714 locus=Lus10033714.g ID=Lus10033714.BGIv1.0 annot-version=v1.0 ATGAGAAAGCATGCCAATTTTTCCCACTCAGGAAGGATGTTTAGTGATAGGAAATGGATCATCCCTTTCTTTGCAAGCTTGCTAGTCTCTCTAACCTTGT TTCTATGGAGTGCTTTCGGGATGTTCTCGTCGTCGTCCTCTAATGGAGGGGACGTCGAGTTGCCATTCGAGGATGTAATATCGTTTTCGAGATCGGAGGG TTCGAGTGGTGGCTACTTTGTGGAATCCAAATTTAGAAAGAGGTTGAATGCAAGTGAAGGTTTGGAATTCGAAGCTCCTAAGCTGGCTTATCTTGTTTCG GGGACTAAAGGCGACAGTCGTAGAATGTTGAGGACTTTGCAAGCTGTGTACCATCCGAGAAACCAGTACATCTTGCACTTGGATCTCGAGGCTCCTCCTC GGGAAAGGTTGGAGTTGGCATTGTATGTGAAGAGTGATCCGACTTTCTCTGAAGTTGGCAATGTTCGTGTGATGGCTCAGTCGAATTTGGTTACTTATAA AGGGCCTACTATGATTGCTTGCACCCTGCAAGCTATTGCCATTATGTTGAGGGAAAGCTTGGACTGGGATTGGTTTATCAATCTCAGCGCTTCGGATTAT CCCCTCGTTACGCAAGATGATTTGCTGTACGTGTTCTCCAACGTGTCGCGGAATTTCAACTTCATTGAAAACATGCAACTGACCGGGTGGAAGTTGAACC AAAGGGGAAAATCCATAATTGTTGATCCAGGATTGTACTTGTCAAAGAAATCTGAAGTTGCGTTCACCACCCAGCGACGAACCCTCCCTACTTCGTTCAA GTTGTTTACAGGTTCAGCATGGGTGATGCTCACAAGGTCCTTCGCCGAATACTGCATAATGGGCTGGGAGAATCTCCCGCGGACCATGTTAATGTACTAC ACAAACTTCGTCTCCTCCCCGGAAGGTTACTTCCACACAATCATATGCAACGACGATGAATACCGAAGCACAGCGATTGGCCACGACCTTCATTACATCG CTTGGGATACTCCTCCGAAGCAGCACCCTGTATCCTTGACGATTAAAGACTTCGACAAGATGATCAAAAGCAATGCACCGTTCGCTCGTAAGTTTGCAAA GAACGACCCCGTCTTGGATAAGATAGATAAAGAGCTCCTCGGCCGGACAGGCAGGTTTGCTTCTGGAGCTTGGTGCATTGGTGGGTTGGATAATGTATCG GATCCATGCTCTGTGCGTGGGGATGACTCGGTTTTTCGGCCAGGTCCTGGTGCGAGGAGATTGCAGGAACTGCTCGAGATATTGTTGTCTGACGAGTCAC GGAAGAAGCAGTGTTGA
AA sequence Show only first row Show all	>Lus10033714 pacid=23143388 polypeptide=Lus10033714 locus=Lus10033714.g ID=Lus10033714.BGIv1.0 annot-version=v1.0 MRKHANFSHSGRMFSDRKWIIPFFASLLVSLTLFLWSAFGMFSSSSSNGGDVELPFEDVISFSRSEGSSGGYFVESKFRKRLNASEGLEFEAPKLAYLVS GTKGDSRRMLRTLQAVYHPRNQYILHLDLEAPPRERLELALYVKSDPTFSEVGNVRVMAQSNLVTYKGPTMIACTLQAIAIMLRESLDWDWFINLSASDY PLVTQDDLLYVFSNVSRNFNFIENMQLTGWKLNQRGKSIIVDPGLYLSKKSEVAFTTQRRTLPTSFKLFTGSAWVMLTRSFAEYCIMGWENLPRTMLMYY TNFVSSPEGYFHTIICNDDEYRSTAIGHDLHYIAWDTPPKQHPVSLTIKDFDKMIKSNAPFARKFAKNDPVLDKIDKELLGRTGRFASGAWCIGGLDNVS DPCSVRGDDSVFRPGPGARRLQELLEILLSDESRKKQC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10033714 [exp]	0	1
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	4.7	0.6819
AT1G24560			unknown protein		Lus10025844 [exp]	8.5	0.6699
AT5G47540			Mo25 family protein (.1)		Lus10039045 [exp]	12.0	0.6951
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10035778 [exp]	13.8	0.6594
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	25.8	0.6642
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10036562 [exp]	29.9	0.5881
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	46.6	0.6390
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10027441 [exp]	48.4	0.6448
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	48.4	0.6432
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	48.6	0.6413

Compare expression of checked genes

Lus10033714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.