Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 197 / 9e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18590 193 / 5e-59 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT3G45080 192 / 5e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43690 191 / 2e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03770 184 / 5e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G74100 185 / 6e-56 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT1G74090 183 / 5e-55 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT1G13420 181 / 3e-54 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G14920 179 / 1e-53 ATST4A ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, sulfotransferase 4A (.1) AT5G07010 179 / 2e-53 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031624 [exp] 482 / 1e-172 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003070 [exp] 384 / 1e-133 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033719 [exp] 374 / 9e-130 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 367 / 8e-127 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033718 [exp] 357 / 3e-123 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10018047 [exp] 349 / 4e-120 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10034079 [exp] 346 / 2e-119 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033721 [exp] 357 / 7e-119 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10031623 [exp] 339 / 4e-116 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193300 [exp] 222 / 2e-70 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 220 / 9e-70 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.017G100400 [exp] 208 / 6e-65 AT3G45070 250 / 3e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G032700 [exp] 206 / 2e-64 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.003G193200 [exp] 201 / 2e-62 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 201 / 4e-62 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048300 [exp] 199 / 2e-61 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048200 [exp] 196 / 2e-60 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G049100 [exp] 192 / 5e-59 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048400 [exp] 191 / 2e-58 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10033716 pacid=23143415 polypeptide=Lus10033716 locus=Lus10033716.g ID=Lus10033716.BGIv1.0 annot-version=v1.0 ATGGTGAGTTCATCTGCGGATCAAGATCTGAAGAAGATCGAAACAACGACGACGACGACGACAACGTTTTGGGACAGTGTCGAGATTTGCGAGTCCGGTG GCTTCTGGTACGGCCCCGCACCACATATGGTGGACTCCGTCAAAGCCTTCCGAGCAAACTACCGGCCGGCTCGAGACGACGTCGTGGTGTTGGCAAGCAT GTTGAAAGCTGGAACCACGTGGCTCAAGTCTCTGTCTCACTGCATCCTCTTTCGAGATGTCGAAGAAGAAGATGACATCCTCACCCACAAGAATCCTCAT ATGTGTGTTCCCACCTTCGAGGCTACGCTCTATATGGGCGACCCTTCCACGTTTCCTCCTATCGATCCCGAGCGCCGGCTTTTTCACACGCATGTCCCGT ACAGCAACCTACCGGAATCCATAACAAAAGGCTCCGGCGACCGCGCCCGATGCAAATTCGTCTACGTGACACGAGAACCAAAGGACATGCTGGTGTCGAT GTGGTATTTCTACAACAAAGCGATCGGGCCGTTTCCATTGGAGAGAGCCGTGGAGAGCTTCTGCAGTGGCGTGATGTATTTCGGGCCGTTCTACGAGCAC TTGCTGGAGTACTGGGAAGAGAGCAAGAGATCTCCCGACAGGGTGATGTTCATCAAGTACGAGGATCTTCATCGAGACCCGAAACCGCACGTGCGCAGGC TGGCCTCGTTTCTAGGGAGGCCTTTCGGTGACGATGATGAAGAAGAAGTTGAGAAGGTCATATGGAGGAGCAGCTTCGACAGGCTTAAGGATTTGGACGT TAACAAGGATGATGTAGAGCAGAATTTCAAGTCGTGGGCCCCACTTTTGAAGAACAACTGCTTCTTTCGGTGTGGGAAAGTTGGAGACTGGAGGAACCAC TTGACGGCGGAGATGGCTGAACGTATCAACAAGATAACGAGGATGAAGTTAGAGGGTACTGGATTTTATTTCGAGGACGAGGATTGA
AA sequence Show only first row Show all	>Lus10033716 pacid=23143415 polypeptide=Lus10033716 locus=Lus10033716.g ID=Lus10033716.BGIv1.0 annot-version=v1.0 MVSSSADQDLKKIETTTTTTTTFWDSVEICESGGFWYGPAPHMVDSVKAFRANYRPARDDVVVLASMLKAGTTWLKSLSHCILFRDVEEEDDILTHKNPH MCVPTFEATLYMGDPSTFPPIDPERRLFHTHVPYSNLPESITKGSGDRARCKFVYVTREPKDMLVSMWYFYNKAIGPFPLERAVESFCSGVMYFGPFYEH LLEYWEESKRSPDRVMFIKYEDLHRDPKPHVRRLASFLGRPFGDDDEEEVEKVIWRSSFDRLKDLDVNKDDVEQNFKSWAPLLKNNCFFRCGKVGDWRNH LTAEMAERINKITRMKLEGTGFYFEDED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45070			P-loop containing nucleoside t...		Lus10033716 [exp]	0	1
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	2.4	0.9174
AT1G50060			CAP (Cysteine-rich secretory p...		Lus10025697 [exp]	4.9	0.8947
AT2G39040			Peroxidase superfamily protein...		Lus10021956 [exp]	5.5	0.8538
AT1G65550			Xanthine/uracil permease famil...		Lus10014777 [exp]	9.6	0.7880
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10012002 [exp]	14.7	0.8439
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10004391 [exp]	15.3	0.7332
AT3G14520		AtTPS18	Terpenoid cyclases/Protein pre...		Lus10002660 [exp]	15.7	0.8719
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	16.0	0.8912
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	17.9	0.8620
AT5G24070			Peroxidase superfamily protein...		Lus10004804 [exp]	20.2	0.8677

Compare expression of checked genes

Lus10033716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.