Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 496 / 5e-176 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G00040 259 / 2e-83 Chalcone and stilbene synthase family protein (.1) AT4G34850 254 / 5e-81 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT1G02050 240 / 8e-76 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT3G52160 47 / 2e-05 KCS15 3-ketoacyl-CoA synthase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031622 [exp] 763 / 0 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 531 / 0 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 474 / 2e-167 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 331 / 8e-112 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 315 / 2e-107 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 264 / 5e-85 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 256 / 8e-82 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 248 / 1e-78 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 244 / 6e-77 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051500 [exp] 538 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 535 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 533 / 0 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 533 / 0 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 524 / 0 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 515 / 0 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 438 / 2e-153 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 438 / 2e-153 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.005G175200 [exp] 328 / 4e-111 AT5G13930 425 / 2e-149 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 260 / 1e-83 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033717 pacid=23143373 polypeptide=Lus10033717 locus=Lus10033717.g ID=Lus10033717.BGIv1.0 annot-version=v1.0 ATGGGCACGATGATCGTGGATCGATTCCGGAAAGAACAGAGGTCCGATGGAGTTGCGACGATATTAGCCATCGGTACCGGAACTCCACCGTTCTGCATTG AACAGAGCAGTTTCCCTGATTACTACTTCCGCATTACCAACATGGAACACAACACTCAGCTTAAAGACAAGTTCAAACGCCTATGTGAAAGGTCCAACAT TGAGAAGCGTTACTTTCACCTGACTGAACAATTATTGAAAGAAAATCCAGATTTTTCATCATACACCGAGCCCACATTCAATGCTCGTCAAGATATGGTC TTAGAGGAAGTCCCAAAGCTAGCCCAAGAAGTTGCCACAAAGGCCATAACAGAATGGGCCCAGCCCAAATCCAAAATCACCCACTTAATATTCTGCACAA GTACGGGAGTCGACATGCCCGGCGCTGACTACCAACTCACCATGCTCTTGGGCCTCGAGTCGTCCGTAAACCGGACCATGATGTACCACCAGGGCTGCTA CGCGGGGGGCGCGGCCCTCCGCCTGGCCAAGGATCTGGCCGAGAACAATAGTGGCGCTCGGGTTCTCGTAGTTTGCTGCGAGATTACCACCATCGCATTT CGCGGGCCTAGTGACGACGACTTCGCGACCCTCGTGTGTCACGCGTTGTTTGGGGACGGTGCGGGCGCGGTGATCGTGGGCGCGGACCCAGTACCGGACG TGGAGAGGCCGTTGTTCGAGCTGGTCCGCGGGGCCCAGACTATTGTACCGGATTCCGAAGGGGCGATCGTGGGGAACAGCCGCGACGTCGGGATGACTTA TAAACTAAGAAGGGATGTGCCTAGCCTTGTTGGTAACAACATTGAGAAGTGTCTTGTTGATGCATTTGAACCATTGGGGGATAATATTGTTGGCGATTGT GATTGGAACTCTTTGTTTTGGGTGGCCCACCCTGGTGGGCCTGCTATACTGGCTAAAGTGGAAGAGAAGTTGAGGCTTGAGCCCGGGAAGCTACGGGCTT CGAGGCGGGTTATGGCCCAGTATGGGAACATGTGGAGTGGGACTGTGTTGTTTGTATTGGATGAGATGAGGAACAAGTCTGCTGGAGATGGGCTGAGTAC TACTGGAGAAGGGCTTGAATGGGGTGTGCTTCTGGCTTTTGGGCCTGGTTTGACCATCGAGACTCTGATTCTTCGTAGTTGTGTAGTTGGAATTTAA
AA sequence Show only first row Show all	>Lus10033717 pacid=23143373 polypeptide=Lus10033717 locus=Lus10033717.g ID=Lus10033717.BGIv1.0 annot-version=v1.0 MGTMIVDRFRKEQRSDGVATILAIGTGTPPFCIEQSSFPDYYFRITNMEHNTQLKDKFKRLCERSNIEKRYFHLTEQLLKENPDFSSYTEPTFNARQDMV LEEVPKLAQEVATKAITEWAQPKSKITHLIFCTSTGVDMPGADYQLTMLLGLESSVNRTMMYHQGCYAGGAALRLAKDLAENNSGARVLVVCCEITTIAF RGPSDDDFATLVCHALFGDGAGAVIVGADPVPDVERPLFELVRGAQTIVPDSEGAIVGNSRDVGMTYKLRRDVPSLVGNNIEKCLVDAFEPLGDNIVGDC DWNSLFWVAHPGGPAILAKVEEKLRLEPGKLRASRRVMAQYGNMWSGTVLFVLDEMRNKSAGDGLSTTGEGLEWGVLLAFGPGLTIETLILRSCVVGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	0	1
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	2.2	0.9393
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10010769 [exp]	2.8	0.9346
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	3.9	0.9305
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10010273 [exp]	3.9	0.8867
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10033755 [exp]	6.0	0.9169
					Lus10021792 [exp]	7.3	0.9027
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	7.7	0.9179
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	8.9	0.9267
AT1G07080			Thioredoxin superfamily protei...		Lus10022669 [exp]	10.5	0.8975
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011473 [exp]	11.3	0.8866

Compare expression of checked genes

Lus10033717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.