Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74100 209 / 2e-65 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT3G45070 206 / 3e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 200 / 6e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18590 198 / 9e-61 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT2G03760 196 / 4e-60 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT5G07010 195 / 1e-59 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT1G13420 194 / 1e-59 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT1G74090 194 / 3e-59 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT5G43690 192 / 9e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07000 191 / 5e-58 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033719 [exp] 405 / 2e-142 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003070 [exp] 399 / 1e-139 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018047 [exp] 379 / 7e-132 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031623 [exp] 376 / 1e-130 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) Lus10031624 [exp] 371 / 9e-129 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034079 [exp] 358 / 6e-124 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 357 / 4e-123 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 356 / 1e-122 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033721 [exp] 366 / 2e-122 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048300 [exp] 226 / 5e-72 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.003G193500 [exp] 222 / 3e-70 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048400 [exp] 220 / 1e-69 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048200 [exp] 218 / 8e-69 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.017G100400 [exp] 218 / 1e-68 AT3G45070 250 / 3e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G193400 [exp] 218 / 1e-68 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 216 / 4e-68 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.004G031400 [exp] 216 / 8e-68 AT1G13420 248 / 2e-80 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.012G032700 [exp] 215 / 9e-68 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.011G049100 [exp] 214 / 3e-67 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10033718 pacid=23143315 polypeptide=Lus10033718 locus=Lus10033718.g ID=Lus10033718.BGIv1.0 annot-version=v1.0 ATGAGTTCGGTTGACGCTGCCGATCAAGGCGATGACGGCGATCTTGCGAACCCAAAAAAGGATCAAGAGATGATGTTCTGGGACAGAACCGAGATTCGGC AGGTACGAGGATTCTGGTACCGATCGGTTCACATACGAGCCATAGAAGAGTTCAGAGCAGAGTTCGAGCCGAGGAGAGACGACGTCGTAATACTGGCGTC AGCACAGAAGACTGGAACCACTTGGCTGAAGGCACTCTCTCACTCCATCGTCTCCCGAGATGACGAAGGAGAAGACGGTCTGACGAGGATGATTCCTCAA GTTTGTGTTCCTTCTTTCTACAGCATGGTCTACTCCGAGGATCCAGCAATCCGTCCTACTGATATCGATCAACGCCGGCTGTTCCACACTCATGTCCCCT TCAGCTACCTGCCGGACTCTATAAAAACCTACGCTCGTAACTGCAAGCTGGTCTACATAACCCGAGACCCAAAGGACACTCTGATATCTCAGTGGCATTT CTTCAACAAGCTCTTCAAAGACAAAGACGACAATCCGTTCCCACTGGAGAGAGCCGTGGAGAGCTTCTGTAGCGGCGTGATGCCGTTCGGGCCCTACTGG GAGCACGTGCTGGAGTACTGGGAAGAGAGCAAGAGATCCCCCGACAACGTGATGTTCGTCAAGTACGAGGACCTCCATCGCGACACCAAACTGTACGTCC GTAAGCTGGCCGCGTTCATGGGGAAGCCTTTTGGTGATGGTGGTAGTGGTGATGAAGAGGTTGAGAAGGTGATATGGAGAAGCAGCTTCGACAGGCTTAA GGATTTGGAAGTGAACAAGACGGAGCAGAAGCTGGAGACAAAGAGGTTTGGTCGTCTACAGCCGAGTCACTTCTTCCGACGTGGCGAAGTTGGCGATTGG AGGAACTACTTGACACCCGAGATGGCGGAGCGTGTGGATGGCATTACAAGGGTGAAGTTTCAAGGTACTGGACTTTATCTCGAAGACGAGGGGTGA
AA sequence Show only first row Show all	>Lus10033718 pacid=23143315 polypeptide=Lus10033718 locus=Lus10033718.g ID=Lus10033718.BGIv1.0 annot-version=v1.0 MSSVDAADQGDDGDLANPKKDQEMMFWDRTEIRQVRGFWYRSVHIRAIEEFRAEFEPRRDDVVILASAQKTGTTWLKALSHSIVSRDDEGEDGLTRMIPQ VCVPSFYSMVYSEDPAIRPTDIDQRRLFHTHVPFSYLPDSIKTYARNCKLVYITRDPKDTLISQWHFFNKLFKDKDDNPFPLERAVESFCSGVMPFGPYW EHVLEYWEESKRSPDNVMFVKYEDLHRDTKLYVRKLAAFMGKPFGDGGSGDEEVEKVIWRSSFDRLKDLEVNKTEQKLETKRFGRLQPSHFFRRGEVGDW RNYLTPEMAERVDGITRVKFQGTGLYLEDEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033718 [exp]	0	1
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10035453 [exp]	4.4	0.9086
AT5G03330			Cysteine proteinases superfami...		Lus10026525 [exp]	8.3	0.9257
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10000257 [exp]	8.7	0.8912
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	11.8	0.9171
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	12.5	0.9328
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	13.6	0.9069
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	15.0	0.9167
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031195 [exp]	17.2	0.9237
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	19.5	0.9271
AT5G36930			Disease resistance protein (TI...		Lus10007828 [exp]	19.8	0.9055

Compare expression of checked genes

Lus10033718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.