Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 187 / 5e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G74100 185 / 7e-56 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT1G74090 183 / 4e-55 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT1G18590 181 / 3e-54 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT5G43690 179 / 8e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 177 / 7e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G26280 174 / 4e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03770 174 / 6e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13420 172 / 6e-51 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G03760 170 / 2e-50 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033718 [exp] 392 / 5e-137 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031624 [exp] 371 / 1e-128 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003070 [exp] 360 / 3e-124 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 355 / 2e-122 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018047 [exp] 332 / 3e-113 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033721 [exp] 338 / 2e-111 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10033720 [exp] 327 / 2e-111 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10034079 [exp] 309 / 1e-104 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031623 [exp] 307 / 1e-103 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100400 [exp] 198 / 6e-61 AT3G45070 250 / 3e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G032700 [exp] 194 / 2e-59 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.003G193400 [exp] 193 / 3e-59 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 193 / 5e-59 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048300 [exp] 192 / 1e-58 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.017G100500 [exp] 187 / 4e-57 AT1G13420 221 / 2e-70 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.011G048712 [exp] 187 / 1e-56 AT1G18590 265 / 1e-86 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.004G031400 [exp] 186 / 4e-56 AT1G13420 248 / 2e-80 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.011G048400 [exp] 185 / 5e-56 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G049100 [exp] 184 / 1e-55 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10033719 pacid=23143393 polypeptide=Lus10033719 locus=Lus10033719.g ID=Lus10033719.BGIv1.0 annot-version=v1.0 ATGGGTGCATCATCAGCTACATCAGAGCTTGATGATGTTGAGAAGAAGGAAATGTTCTTTTGGGACAGTATTGAGATTTGCAAGATACAAGGCCAGCAGA AGTTCTGGAGCCACTCCAATCTAATCGATCCCACAAACGCCTTCAGAGACACCTACCAGCCTAGCCGCGACGACGTCGTAGTGTTGGCATCGGCCATGAA AACAGGAACAACTTGGCTCAAGGCTCTCTCTCACTGCATCCTCTTTCGAGACGAAGCGGTAGAGGATGAAGAGGACTTGCTCACCAAGGTCAATCCACAG TTTTGTGTACCTACCTTCGAGATGATGAGTGTCTTTCCTGTTGATCATTCTGATCATGAACATCGATTGTTCCACACCCATCTTCCGTACAGTTGCCTTC CGGATTCGATAAAGAATCACACCCGCGGATGCAAGTTGGTGTACATCACTCGAGAACCGAAGGACACTTTGGTATCTCAGTGGCATTTCTTCAACAAGAT GCTATTCAAAGAAGATAACGATAAACATTTCCCGTTGGAGAGAGCTGTGGAGAGCTTCTGTAACGGAGTGATGCATTCAGGGCCGTACTGGGATCACGTG CTGGAGTACTGGGAAGAAAGCAAGAGATCTCCCGACAACGTGATGTTCATCAAGTACGAGGATCTTCATCGCGATCCGAAACTGTACGTGCGTAAGCTGG CCGCGTTCATGGGCAAGCCTTTTGGTGAAGATGATGATGATAAAGAAGTTGAGAAGGTTATATGGAGAAGCAGCTTCGACCGGCTTAAGGATTTGGAGGT CAATAAGACGGCGCCAAAGCAAAACGGAGAGATTACTGCTCCTAGTCATCATTTGAAGTACAGCGACTTCTTCCGACGTGGCGGTGTAGGGGACTGGAGG AACTACTTGACGGTGGAGATGGCTGAACGTGTTGACGGCGTTACGCGCATCAAGTTTCGAGGGACCCGACTTTATCTCGAGGATGACAAGGCAATATAA
AA sequence Show only first row Show all	>Lus10033719 pacid=23143393 polypeptide=Lus10033719 locus=Lus10033719.g ID=Lus10033719.BGIv1.0 annot-version=v1.0 MGASSATSELDDVEKKEMFFWDSIEICKIQGQQKFWSHSNLIDPTNAFRDTYQPSRDDVVVLASAMKTGTTWLKALSHCILFRDEAVEDEEDLLTKVNPQ FCVPTFEMMSVFPVDHSDHEHRLFHTHLPYSCLPDSIKNHTRGCKLVYITREPKDTLVSQWHFFNKMLFKEDNDKHFPLERAVESFCNGVMHSGPYWDHV LEYWEESKRSPDNVMFIKYEDLHRDPKLYVRKLAAFMGKPFGEDDDDKEVEKVIWRSSFDRLKDLEVNKTAPKQNGEITAPSHHLKYSDFFRRGGVGDWR NYLTVEMAERVDGVTRIKFRGTRLYLEDDKAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	1.0	0.9126
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018501 [exp]	1.4	0.9010
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	3.0	0.9001
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10043245 [exp]	3.9	0.8864
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018068 [exp]	5.3	0.9001
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012400 [exp]	6.6	0.8671
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10041036 [exp]	8.4	0.8771
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018067 [exp]	9.8	0.8623
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	9.8	0.8744
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	10.0	0.8708

Compare expression of checked genes

Lus10033719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.