Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74100 217 / 4e-68 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT3G45070 216 / 4e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18590 215 / 2e-67 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT1G74090 213 / 3e-66 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT3G45080 210 / 1e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03760 201 / 5e-62 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT1G13420 201 / 6e-62 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT5G07010 198 / 1e-60 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT5G43690 197 / 1e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28170 197 / 2e-60 SOT7 sulphotransferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033721 [exp] 462 / 1e-159 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10018047 [exp] 383 / 5e-133 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031623 [exp] 377 / 1e-130 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) Lus10031624 [exp] 365 / 4e-126 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 345 / 3e-118 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003070 [exp] 343 / 1e-117 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031621 [exp] 336 / 4e-116 AT1G74100 182 / 5e-56 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033718 [exp] 335 / 2e-114 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033719 [exp] 326 / 1e-110 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048300 [exp] 233 / 1e-74 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048712 [exp] 227 / 6e-72 AT1G18590 265 / 1e-86 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048200 [exp] 226 / 1e-71 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.003G193300 [exp] 221 / 7e-70 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048400 [exp] 221 / 1e-69 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G049100 [exp] 220 / 2e-69 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.012G032700 [exp] 219 / 4e-69 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.003G193400 [exp] 218 / 9e-69 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048100 [exp] 216 / 6e-68 AT1G74100 251 / 1e-81 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.003G193500 [exp] 216 / 2e-67 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10033720 pacid=23143530 polypeptide=Lus10033720 locus=Lus10033720.g ID=Lus10033720.BGIv1.0 annot-version=v1.0 ATGAGTGCTTCTACAAAGGAAGAAGCCAGTTGGGGCATCGACCAAACTCAGGTAGTTAAGCTTCGCCAGAAGCAAGCAAGACGAGGTCGCTCCGCTTCGT CGGTCATCTGTTCAATCTGGAATTCCATCTCTTGTTTGGTTTCTGGTACCGAAGGATTCTGGTACAGTGCCACTCTTCTGGGTTCGATAAACGCTTTCAG GGCAAACTTCAAGCCCAAACGTGAAGACAACGTCGTGATCTTGGCTTCTAACCCGAAAACCGGAACCACTTGGCTGAATGCTCTCTCTTACTGCATCCTG TTTCGCGATGAAGATGAAGAAGAAGACATTCTCACCAAGATGAACCCTCATCTTTGTGTTCCCTACTTGGAGGGCGGTGTGTATTGGGACGACCCATCTA GTCGTGTTGATCCAGGGCAAGATCGACTATTCCATACTCACATGCCGTGGAGCTACCTTCCGGAATCAGTTAAAAAGGGATGCAAATTGGTTTACATCAC ACGAGATCCAAAGGACACATTGGTCTCCCATTGGTATTTCCACAACAAATTACGTAAAGCTAATCAAGATCCGTTGAAAATCGAGACCGCCGCGGAGATC TTCTGCAGCGGCGAGATTACTTTCGGTCCGTACTGGGAGCATGTGTTGGAGTACTGGGAAGCAAGCCAAAGATCCCCTGACAGAGTGATGTTCATCAAGT ACGAGGATCTTCGCCACGACCCGAAACCGCACGTGCGCAAGCTGGCGTCGTTTCTAGGCAAACCATTTGGTAAGGATGGTGATGATGATGATGCAGAAGT TGAGAAGGTTATCTGGAGAAGCAGCTTCGACCGACTTAAGGATTTGGATGTGAACAAGGCCGGGAAGTCGTACCCAGTGCTGGCTCCACAGTTAACGAAC AACTTCTTCTTCCGGCGAGGTGAAGTTGGAGACTGGCGAAACCATCTGACGCCCGAGATAGCTAAGCGGATCGATGACATTACTCGGGAGAAGTTCCGAG GGACGGGGCTTTACCTTCATGATGGAGAGGCGACGATTTGA
AA sequence Show only first row Show all	>Lus10033720 pacid=23143530 polypeptide=Lus10033720 locus=Lus10033720.g ID=Lus10033720.BGIv1.0 annot-version=v1.0 MSASTKEEASWGIDQTQVVKLRQKQARRGRSASSVICSIWNSISCLVSGTEGFWYSATLLGSINAFRANFKPKREDNVVILASNPKTGTTWLNALSYCIL FRDEDEEEDILTKMNPHLCVPYLEGGVYWDDPSSRVDPGQDRLFHTHMPWSYLPESVKKGCKLVYITRDPKDTLVSHWYFHNKLRKANQDPLKIETAAEI FCSGEITFGPYWEHVLEYWEASQRSPDRVMFIKYEDLRHDPKPHVRKLASFLGKPFGKDGDDDDAEVEKVIWRSSFDRLKDLDVNKAGKSYPVLAPQLTN NFFFRRGEVGDWRNHLTPEIAKRIDDITREKFRGTGLYLHDGEATI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	0	1
AT1G10350			DNAJ heat shock family protein...		Lus10030803 [exp]	1.4	0.9102
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	4.2	0.9140
AT4G40070			RING/U-box superfamily protein...		Lus10034157 [exp]	4.9	0.9100
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10040169 [exp]	6.3	0.9071
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	8.5	0.9053
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	8.9	0.8937
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10009229 [exp]	10.4	0.9012
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	12.1	0.9102
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10031474 [exp]	12.4	0.9027
AT4G40070			RING/U-box superfamily protein...		Lus10043426 [exp]	13.6	0.9024

Compare expression of checked genes

Lus10033720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.