Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18590 219 / 2e-65 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT1G74100 219 / 2e-65 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT3G45070 215 / 4e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 213 / 2e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43690 212 / 6e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G74090 212 / 7e-63 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT2G03760 207 / 2e-61 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT1G13420 202 / 2e-59 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G03770 200 / 2e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28170 194 / 4e-56 SOT7 sulphotransferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033720 [exp] 463 / 7e-160 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031621 [exp] 417 / 1e-143 AT1G74100 182 / 5e-56 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031623 [exp] 402 / 4e-136 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) Lus10018047 [exp] 402 / 5e-136 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033718 [exp] 367 / 3e-122 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10003070 [exp] 365 / 2e-121 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033719 [exp] 355 / 1e-117 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031624 [exp] 350 / 1e-115 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 347 / 1e-114 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048200 [exp] 239 / 5e-73 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G049100 [exp] 236 / 5e-72 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048712 [exp] 236 / 8e-72 AT1G18590 265 / 1e-86 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048300 [exp] 234 / 4e-71 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048400 [exp] 231 / 5e-70 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.012G032700 [exp] 229 / 2e-69 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.011G048100 [exp] 226 / 2e-68 AT1G74100 251 / 1e-81 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.004G031400 [exp] 227 / 3e-68 AT1G13420 248 / 2e-80 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.003G193400 [exp] 220 / 7e-66 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 220 / 8e-66 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10033721 pacid=23143274 polypeptide=Lus10033721 locus=Lus10033721.g ID=Lus10033721.BGIv1.0 annot-version=v1.0 ATGGGTAGTATCACGAGTTCCACAGAACTTGCTCATCCCCCACACCACAAGGAATTGCAATGTTGGGATGTGGAGTTGGTCGAGATACAAGGATTCTGGT ACCACACCAGTCTTGTTGGCTCCATCGATGCTTTTAGGGCAAACTTCAAGCCCAAACGTGAAGACGACGTCGTAGTCTTGGCATCCTCCATGAAAACTGG AACCACTTGGCTCAAGGCTCTCTCTCACTGCATCCTGTTTCGAGATGATGATGGGGAAGAAGTAGACCTTCTCACAAAAATGAACCCTCATCGTTGTGTT CCTTCTTTAGAGGGCCGTGTGTATTTGGATCACGACCCATCAAGTCATAAGGCTGCAGAACAAGGAGGTAGGCTCTTCAACACTCACATGCCATATAGCT ACCTACCAGATTCCATTAAAAAAGACTGGAAACTCGTTTACATCACCAGAGATGCAAAGGACACGTTAGTGTCGCAGTGGCATTTCTTCAACAAAATCTT CAAAGGCAACATTCAAGAACCTTTAACACTGGAGAGAGCTGTTGAGATCTTCTGCGACGGCAGGATCCCTTTCGGTCCGTGTTGGGATCATGTGTTGGAG TACTGGGAAGCAAGCCAAAGATCCCCTGACAGAGTGATGTTCATCAAGTATGAGGATCTTCGTCACGACCCGAAATTTGAGGTGCGCAAGTTGGCATCGT TTCTAGGCAAACCATTCAGTAGTGATGATGATGCAGAAGTTAAGAAGGTTATATGGAGAAGCAGCTTCGACCGGCTTAAGGATTTGGATGTGAACAAGAC CGGGAAGTCTTACCCGGCGACGGTTCCGCTTTTAACGAACAACCTCTTCTTCCGGCGAGGTGAAGTTGGAGACTGGCAAAATCATTTGACGCCCGAGATG GCAAAACGCGTTGATGATATTACTCGGGAGAAGTTTCGACGTTCTGGGCTTTACCTTGACGATGAGGAAGAGGCGATCAGCAACGGTTTCAAAGCACATT CATTTCCCCCCAACGTAATTAATGATATCATGAGTTCCTCTTCTGCACAAGTTGCAGACAGCAAAGAGGCGTGTTGGGATATCGAGCTGAGTGAGGTGGG AGGATTCTGGTACAGCTCCGCTCTTCTCCCTTCCGTCAACGCTTTCAGGGCAAACTTCGACCCCAAACGCCGCGGAGACGACGAAGACGTCGTGGTGATC TTGGCGTCGAATCCGAAAACCGGAACCACTTGGCTCAAGGCTCTGTCTTACTGCATCCTGTTTCGTGATGAAGATGAAGAAGAAGACCTTCTCACAAAAA TGAACCCTCATCTGTGTGTTCCCTCTTTGGAGGCTGGCGTGTATTTGGACGACCACCCATCAAGTCGTGTTGATCGAGGCCGGCTATTCAATACTCACAT GCCTTACAGCTACCTTCCGGATTCCGTCAAAAAAGACTGCAAATTGGTCTACATCACACGAGACCCAAAGGACACGTTGGTATCCCAGTGGCATTTCTTC AACAAAGTATACCGACACAATCTCGGCCCTTTATCACTGGAGCGAGCTGCCGAGATCTTTTGCAGCGGCAGGATCCCTTCAGGTCCGTACTGGGAGCATG TGTTGGAGTACTGGGAAGCAAGCCAAAGATCCCCCGACAAAGTGATGTTCGTCAAGTACGAGGACCTTCGTCGTGATCCCAAACCGCACGTGCGGAAGCT GGCATCGGTTTTAGGAAAGCCATTTCGTGATGATGATGGAGAAGTTGAGAAGGTCATATGGAGAAGTAGCTTCGACCGGCTTAAGGATTTGGACGTGAAT AAAAACGGCAAGTCGTACCCGGAGGTGGCTCCGCTTCTGACGAACAACCTCTTCTTTCGTCGCGGTGAAGTTGGAGACTGGCGGAATCATTTGACGCCCG AGATAGCTAAACGGATCGACGATAGTACTCGGGAGAAATTTCGAGGTACCGGGCTTTATCTCGATCAGGACGAGGCGATTTGA
AA sequence Show only first row Show all	>Lus10033721 pacid=23143274 polypeptide=Lus10033721 locus=Lus10033721.g ID=Lus10033721.BGIv1.0 annot-version=v1.0 MGSITSSTELAHPPHHKELQCWDVELVEIQGFWYHTSLVGSIDAFRANFKPKREDDVVVLASSMKTGTTWLKALSHCILFRDDDGEEVDLLTKMNPHRCV PSLEGRVYLDHDPSSHKAAEQGGRLFNTHMPYSYLPDSIKKDWKLVYITRDAKDTLVSQWHFFNKIFKGNIQEPLTLERAVEIFCDGRIPFGPCWDHVLE YWEASQRSPDRVMFIKYEDLRHDPKFEVRKLASFLGKPFSSDDDAEVKKVIWRSSFDRLKDLDVNKTGKSYPATVPLLTNNLFFRRGEVGDWQNHLTPEM AKRVDDITREKFRRSGLYLDDEEEAISNGFKAHSFPPNVINDIMSSSSAQVADSKEACWDIELSEVGGFWYSSALLPSVNAFRANFDPKRRGDDEDVVVI LASNPKTGTTWLKALSYCILFRDEDEEEDLLTKMNPHLCVPSLEAGVYLDDHPSSRVDRGRLFNTHMPYSYLPDSVKKDCKLVYITRDPKDTLVSQWHFF NKVYRHNLGPLSLERAAEIFCSGRIPSGPYWEHVLEYWEASQRSPDKVMFVKYEDLRRDPKPHVRKLASVLGKPFRDDDGEVEKVIWRSSFDRLKDLDVN KNGKSYPEVAPLLTNNLFFRRGEVGDWRNHLTPEIAKRIDDSTREKFRGTGLYLDQDEAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10033721 [exp]	0	1
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	4.4	0.9623
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	5.5	0.9611
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	5.7	0.9540
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	5.8	0.9617
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	6.7	0.9592
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006463 [exp]	10.2	0.9594
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10038940 [exp]	12.2	0.9522
AT5G65030			unknown protein		Lus10026049 [exp]	13.0	0.9568
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	15.2	0.9557
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	15.9	0.9571

Compare expression of checked genes

Lus10033721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.