Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003899 [exp] 104 / 1e-26 ND / Lus10029540 [exp] 99 / 4e-24 ND / Lus10039884 [exp] 80 / 1e-18 ND / Lus10012614 [exp] 66 / 1e-13 ND / Lus10020961 [exp] 64 / 3e-11 ND / Lus10002975 [exp] 53 / 7e-08 ND / Lus10011759 [exp] 47 / 4e-06 ND / Lus10020595 [exp] 44 / 5e-05 ND / Lus10039373 [exp] 40 / 0.0003 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033722 pacid=23143307 polypeptide=Lus10033722 locus=Lus10033722.g ID=Lus10033722.BGIv1.0 annot-version=v1.0 ATGATCTCTTGCTTCTTACATGCCGCTCCGAAGGCTCTGTTTCGCTCGATTGGAGATTTATGTGGAGGTTTTCTTTGCTTTGAAGAAGCGAGAAGCCTTG CCTTCGTGCGGATAAAGGTGAAAGCTACGTCGTCTATCCCGGAGGAGATTGCGATCTGTTTTCGATCAGAGGTGTTTCATGTTCGCATTGAAGTGGAGGC TTTAAAGCCGTTGTCGGCGGGTTGCATTCTTGTTGATTTCTTCAAAGGCTGGAAGGCAAAAGGGGTGGGCTTCAAGGTAAATGGGCTGGTCAAAACTTGG TATAATCTAGTGACTTCATCTCCTTCAGAATGTCAAGATGTGGAGTACGGTGCTAACAGTTTGGGGAAGGCAACTTCTTTTGATTCCATTGGTTGCTGCG ATACAGAGTGTAACAGTCCTGGAAGCTCTGTGGGATTCCTCGAAAGTGATAGTTCTGAGATACATACACCTTCAGTTTTTCCTCTATGTTTCCTGCAAGA AGAAGACGAGGTCGATGAGGATGAGGCCTTTGAAGCTTCTACGCGGGAATTGGTCGGGATAATCGAGATGGAATGCAACTGCTCAAGGGAGGAAGGTATA GTAGTAGCGGTTTCGACGGCCAAGGAAGTCAGGTGTCATATTCGCACGCTATCCCTCAATCCCAGCAAGACAGAGAGTTCAAATAGCTGGGGATCAAACC GGGTACAGCTCCCGAGCCAATTTTGA
AA sequence Show only first row Show all	>Lus10033722 pacid=23143307 polypeptide=Lus10033722 locus=Lus10033722.g ID=Lus10033722.BGIv1.0 annot-version=v1.0 MISCFLHAAPKALFRSIGDLCGGFLCFEEARSLAFVRIKVKATSSIPEEIAICFRSEVFHVRIEVEALKPLSAGCILVDFFKGWKAKGVGFKVNGLVKTW YNLVTSSPSECQDVEYGANSLGKATSFDSIGCCDTECNSPGSSVGFLESDSSEIHTPSVFPLCFLQEEDEVDEDEAFEASTRELVGIIEMECNCSREEGI VVAVSTAKEVRCHIRTLSLNPSKTESSNSWGSNRVQLPSQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033722 [exp]	0	1
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	3.6	0.8381
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	12.0	0.7824
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	14.2	0.8107
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	15.8	0.8291
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	17.2	0.8002
AT5G53110			RING/U-box superfamily protein...		Lus10010123 [exp]	17.4	0.7484
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	17.7	0.7790
AT1G29690		CAD1	constitutively activated cell ...		Lus10002768 [exp]	19.0	0.7840
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	19.7	0.7998
AT5G17820			Peroxidase superfamily protein...		Lus10020311 [exp]	23.0	0.7414

Compare expression of checked genes

Lus10033722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.