Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28210 245 / 1e-78 EMB1923 embryo defective 1923 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031620 [exp] 534 / 0 AT4G28210 297 / 4e-99 embryo defective 1923 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146900 [exp] 286 / 9e-95 AT4G28210 356 / 2e-122 embryo defective 1923 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033723 pacid=23143323 polypeptide=Lus10033723 locus=Lus10033723.g ID=Lus10033723.BGIv1.0 annot-version=v1.0 ATGTCGATGATGACGATAACCCTCTCCGCTTCAACTCTCAAACCATCGCCATTCACTTGCGTTCCTCTTCATCGCCACAGTAATCCAATTACATTCCGCT CTTTATTATCCGCTAAACCCAAACCACTGGCCACCAGAATCGCTTGCCAAAGATTGGAAGGTTTTGGGTTTAGGAATTCGAAACTTGAATTCTCCGTCAA CGCACGGAACGGAGAAGGAGATGTTAAGGAGGTCAACAACAGCGAGGGGATCGAAGATGATTCTACCGTTGTTGGTGGAGGAAGCACGTTACCTGATAGA TTCAGGTACTTGACCGAGGAAGCGCCTGACCCTCCTCCCAAGTGGCTTTTGTTCGTTGCACTTGGTTTCATTCTATACACATGGAGGGCAGTACTGGTTG AGCTCGGAAGGTGGATCCCCCCGGCCCCCCGATTCATCAGATTCCCCTTCGGCATCTTTCCATTCATGGTCGACATCGTAAAGCTCCTCATCGCCCAAAT CCTATACTTCATCACGCATCCCGTAACTCCACTCTTACAATTCCTCGAGACCTCAATCCACATAGCTCATTCTTTCTACACCAGGATCCTCAACTACACC TCGGTCTCGGAGTTCACGCTCATGATCCTCCTCTCCTCGACAGTGCTCTCCATAGGCGAAGCTGCTGTCCCCGACTCAGTGAGCAGCCAAAAGTACATCC TCACATTCACGGGTCTGGTTGGACTTGCAGCAGTAGCAAACTACATCTCGGAGCCGCTCTTCTGGACAATTCTTGTAGGGATGTACGTTTTCTTGAGATA TGTACAGAAGAGAGATGATGTTACCTCTGCTCTCCCTGCTGCTGCTGTGTTTGCTGCGATCGGAGAACCTTGGGTTAGGGTGTTGGTTATTGGTTCGTAT GTAGGGCTCGCTGTCTACCACCATTCGAGGAATCTCTCTCGCGAAGGAGAGGGAGAAGAAGATGTTGAAGTAGGGGTAGATGAAAACTTTGTTCCAGTGC CTTTGCTGTGTGCCGCGTTGGCTATTGGTATTAAGGCTGCAGCTAAGTGGGCAGGTTATCGGCACTTGACGTGGATGGTAGTGTAA
AA sequence Show only first row Show all	>Lus10033723 pacid=23143323 polypeptide=Lus10033723 locus=Lus10033723.g ID=Lus10033723.BGIv1.0 annot-version=v1.0 MSMMTITLSASTLKPSPFTCVPLHRHSNPITFRSLLSAKPKPLATRIACQRLEGFGFRNSKLEFSVNARNGEGDVKEVNNSEGIEDDSTVVGGGSTLPDR FRYLTEEAPDPPPKWLLFVALGFILYTWRAVLVELGRWIPPAPRFIRFPFGIFPFMVDIVKLLIAQILYFITHPVTPLLQFLETSIHIAHSFYTRILNYT SVSEFTLMILLSSTVLSIGEAAVPDSVSSQKYILTFTGLVGLAAVANYISEPLFWTILVGMYVFLRYVQKRDDVTSALPAAAVFAAIGEPWVRVLVIGSY VGLAVYHHSRNLSREGEGEEDVEVGVDENFVPVPLLCAALAIGIKAAAKWAGYRHLTWMVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	0	1
AT2G03880		REME1	required for efficiency of mit...		Lus10001617 [exp]	1.0	0.9411
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031764 [exp]	1.7	0.9290
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	2.8	0.9118
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	3.2	0.9147
AT4G36130			Ribosomal protein L2 family (....		Lus10025966 [exp]	4.7	0.9062
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	5.3	0.9311
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10024433 [exp]	5.7	0.9030
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10012574 [exp]	9.7	0.9000
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	9.8	0.8933
AT3G51010			unknown protein		Lus10042347 [exp]	10.1	0.9135

Compare expression of checked genes

Lus10033723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.