Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28230 157 / 1e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031619 [exp] 554 / 0 AT4G28230 206 / 2e-62 unknown protein Lus10018539 [exp] 248 / 2e-78 AT4G28230 232 / 1e-72 unknown protein Lus10039766 [exp] 246 / 1e-77 AT4G28230 234 / 2e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G116200 [exp] 229 / 1e-70 AT4G28230 257 / 1e-81 unknown protein Potri.013G147500 [exp] 228 / 2e-70 AT4G28230 249 / 2e-78 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033724 pacid=23143517 polypeptide=Lus10033724 locus=Lus10033724.g ID=Lus10033724.BGIv1.0 annot-version=v1.0 ATGACGATGAACACACCGGCGGAGATGCAGATATGGAACAACGCCGCTTTCGACGACGACGAATCGGACGATTCGACGGCGAAGGCGAAAGCTTCCTCGT GGTGGTCTCAGTCGGTAAATTCTTCCTCCAAGGAGAACCTCAACCCTTCGATGTTATCTGCCAAGATTCGTGATCAGGAGGAGGAAGAAGATGGAGATAG GATCGATGTCGAGATTGAAGAGATCGAGAAGGAGATTCGCCGACTGTCTACTAGACTGGAAGCTTTACAGCTGAAGAAGCAGCTCCACAATGCTGTGGAA AGAAGGGGGAAAGCGGCGGAGGATTCTCGTCCGACGACGCCTTTTCCGTCTAGTGGGAAAACAATGGAGCATCAATGTGCTACGATGGGGTTTCCGTTGA GTGGGATGAAAACGAAGATTGGTCGGAGAGGGTACAGTTTGGGGCCGGCGGAGATCGCGTCGAAAGCTAGGCTTTTTACCAAGCTGGAGACTGCGGCTGC GGCAATGATGCCGGTTTTGTCGACGGCAAGTCGGAGGAAGTCGTGTTTCTGGAAGCTGGGGGAAATCGACGAATTGAAAGTGACGAAAGAGAGAGGGAAA AGCCAGAGCGTGAGTCCCAAATCTCGAAACGGAACTGAGATGAAGCCTCTGCCGGTGAAGCAGCTGGCTCAAACGACGGCGGGTGGCAAACGGCCGGTGA AGAAAGAGGAATTAGAAATTCTGGCTCTGATCCAGCCCAAGAATCTGTTCAAAGAGGGGGAGAATTCAACTCCGGACAACAGCAACAACAAGAACAAGAA GAAGCAGTCGTCGAGGTCGGGCAGAGTGGTGGCGAGCCGGTACAATCAGATTCCGGCAGTGGCGGCAACAGAGGATCGGAAGCGGTCGTTGCCGGAGAGC GAGAACGACGACGGGAACAAACGGAGGTCGGCTTCCCGACGGGACGGCGGGTTGAACGTGAAGGTGAAGAAGAAGTGGGAGATTCCAATTGAAGTGGTGA TATTCAAAGATCAAGATCAAGATGAAGAAGAAAGGGAAGATGTTTCCTTGGCCAAGATCAGGACACACCGGCGGCAGGGTTCGACAGCGGAGACTCCACG GGACTCTGGTGCGGCGAAAAGGGTAGCGGAATTGATCGGGAAGAAGTCGTTTTTCGCCGTCGATGAGGGTGTTCCGGTGGAGGGCTCCATTTGCCTTGCA CTGAGTTTCGAGGAACAGTGA
AA sequence Show only first row Show all	>Lus10033724 pacid=23143517 polypeptide=Lus10033724 locus=Lus10033724.g ID=Lus10033724.BGIv1.0 annot-version=v1.0 MTMNTPAEMQIWNNAAFDDDESDDSTAKAKASSWWSQSVNSSSKENLNPSMLSAKIRDQEEEEDGDRIDVEIEEIEKEIRRLSTRLEALQLKKQLHNAVE RRGKAAEDSRPTTPFPSSGKTMEHQCATMGFPLSGMKTKIGRRGYSLGPAEIASKARLFTKLETAAAAMMPVLSTASRRKSCFWKLGEIDELKVTKERGK SQSVSPKSRNGTEMKPLPVKQLAQTTAGGKRPVKKEELEILALIQPKNLFKEGENSTPDNSNNKNKKKQSSRSGRVVASRYNQIPAVAATEDRKRSLPES ENDDGNKRRSASRRDGGLNVKVKKKWEIPIEVVIFKDQDQDEEEREDVSLAKIRTHRRQGSTAETPRDSGAAKRVAELIGKKSFFAVDEGVPVEGSICLA LSFEEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28230			unknown protein		Lus10033724 [exp]	0	1
AT3G06150			unknown protein		Lus10034027 [exp]	1.0	0.9025
AT3G57400			unknown protein		Lus10042066 [exp]	3.5	0.8539
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	4.0	0.8693
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	6.0	0.8434
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	8.7	0.8440
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	11.0	0.8606
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	11.7	0.8392
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	12.4	0.8393
AT1G73650			Protein of unknown function (D...		Lus10031343 [exp]	13.4	0.8142
AT4G11350			Protein of unknown function (D...		Lus10007923 [exp]	14.7	0.7987

Compare expression of checked genes

Lus10033724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.