Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12470 1631 / 0 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031618 [exp] 1790 / 0 AT1G12470 1595 / 0.0 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G147600 [exp] 1701 / 0 AT1G12470 1736 / 0.0 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05131 [flax] [poplar] Pep3_Vps18 Pep3/Vps18/deep orange family CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Lus10033725 pacid=23143303 polypeptide=Lus10033725 locus=Lus10033725.g ID=Lus10033725.BGIv1.0 annot-version=v1.0 ATGGATCAGGGGAGGCCGGTGTTCACGGTAGATCTTCTGGAAAGGTATGCGACGAAAGGTCGCGGGGTGATCACTGCCATGGCTGCCGGAAACGACGTGA TTGTTCTGGGAACTAGCAAAGGATGGGTTGTCCGTCACGATTTCGGAGTTGGTGATTCCTACGACATTGACCTCTCCGCTGGGAGACCTGGGGAGCAGTC GATACACAGAGTGTTTGTTGATCCTGGAGGGAGTCATTGCATTGCTACCGTTGTTGGTACTGGCGGGGCTGAGACTTACTACACTCATGCAAAGTGGAGC AAGCCTCGTGCGCTGAGTAGACTGAAAGGTCTTGTTGTGAATGCTGTTGCTTGGAATAGGCAGCAGATCACAGAAGCTTCTACCAAAGAAGTCATTCTTG GCACGGACAATGGGCAACTCTTTGAAATGGCTGTTGATGAGAAGGATAAGAGGGAGAAGTACTTAAAGTTCATATATGAATTGAAAGAACTTCCTGAAGC TTTTATGGGCTTGCAGATGGAGACGGCTAATTTAGGAAGTGGAACCAGATATTATGTGATGGCTGTTACCCCTACGAGGCTTTATTCGTACACTGGGATT GGGTCGTTGGAAGTAAGTTTGGGTTCTGATGAATATTCTCCCTCTCTTAACGAACTGCTTTTCTTCATCAAACAACGAAGAGCTACACATTTCGCATGGC TTTCTGGAGCAGGTATCTATCACGGGGGATTAAACTTCGGAGCTCAACATAGTTATCCAAATGGTGATGAAAATTTTGTTGAGAACAAGGCGCTTCTGAG TTACTCAAAACTCAGTGAAGGTTCTGAAGTTGTTATACCAACATCGCTTGCTGGTTCTGAATTCCATTTCTTACTTCTTATTGGAAATAAAGTTAAGGTT GTGAACAGAATCAGTGAGCATATTGTGGAGGAACTCCATTTTGATCTGGCACCGGAATCTGTTTCACGTGGTATTATTGGGCTATGTAGTGATGCCACTG CTGGCTTGTTCTATGCATATGACCAGAATTCTGTCTTCCAGGTGTCTGTCAATGATGAAGGCAGGGATATGTGGAAGGTGTATCTTAACATGAAAGAATT CGCTGCAGCTTTAGCGAATTGTCGTGATCCATGTCAGAGGGATCAAGTATATTTGGTCCAGGCAGATGCCGCATTTTCCTTGAGGGATTTTCAAAGAGCA GCATCATTCTATGCGAAAGATGCTCTAAGGACTTTCTTGTTGCATAGGCTAGATAATCTTACAAAAGATGATAAGTGCCAAATAACAATGATCTCCACGT GGGCAACTGAGTTGTACTTGGACAAGATAAATCGACTTCTATTGGAAGAGGACAGTGCAATAGAGAATCATAGTGCTGAGTACCAGTCTATCATTCAAGA ATTCCGTGCTTTCCTCAGTGATTCTAAGGATGTCCTTGATGAGGCTACAACAATGAAACTTCTAGAGAGCTATGGACGTGTCGAAGAACTGGTATATTTT GCCAGTCTGAAGGAGCAGCACGAGATTGTAATTCACCACTACATTCAGCAAGGAGAATCAAAGAAAGCTTTGGAAGTACTTCAAAAACCAGCTGTGCCCA TAGATCTCCAGTACAAGTTTGCTCCAGATCTCATTGCACTTGATGCATACGAAACAGTGGAGTCTTGGATGGGGACGAAGAACCTGAATCCACGGAAACT GATTCCTGCAATGATGCGCTATTCAAGCGAACCCCATGCAAAGAATGAGACCCATGAGGTCATCAAGTACTTGGAATTCTGTGTCCATCGTCTGCATAAT GAGGATACTGGAATTCACAATTTGCTTCTATCTCTTTATGCTAAGCAGGAAGATGACAGCGCACTTTTACGGTTCCTACAATGCAAGTTTGGAAAAGGAC GAGAAAATGGACCTGAGTTCTTCTATGATCCAAAGTATGCCCTCCGCCTGTGCCTGAAGGAGAAGCGAATGCGTGCTTGTGTTCATATCTACAGCATGAT GTCCATGCATGAGGAAGCTGTTGCTCTTGCTCTTCAGGTCGATCCTGAGCTTGCTATGGCCGAGGCCGATAAAGTTGAAGACGACGAGGACTTGAGGAAG AAGTTGTGGCTCATGGTTGCTAAGCATGTTATTGAGCAGGAAAAGGGAACCAAGAGGGAGAATATAAGAAAGGCCATTGCATTTCTGAAGGAAACTGATG GACTTTTGAAGATCGAGGATATTCTACCCTTCTTTCCAGACTTCGCCCTAATCGATGACTTCAAGGAAGCAATTTGCTCATCATTGGAGGATTACAACAA GCAAATTGAACAACTGAAAGAGGAGATGAATGATGCTACACATGGTGCGGATAACATCAGGAACGATATCAATGCTCTTGCTCAGAGATATGCTGTCATT GACAAGGACGAAGACTGCGGGGTCTGCAAGAGGAAGATTTTGAATATGGGTGTGGACTATCGCCTCTCCCGGGGATACACGTCTGTGGGACCTATCGCTC CCTTTTACGTATTTCCCTGCGGGCATGCTTTCCATTCAGAATGCTTGATTGCACACGTAACTCGATGCACGACCGAGTCGCAGGCGGAACGTATTCTGGA CCTGCAGAAGCAACTTACGTTACTGGGCGATGGGGCTAGAAAGGACCAAAACGGAAGCATGTTCGATGAGCCGGTGTCAAGCACAACCAATGCAGACAAG CTTCGATCGCAACTGGACGATGCAGTAGCAGGCGAGTGCCCATTCTGCGGCGAGCTAATGATCCGGGAAATCTCAATGCCGTTCATCCTTACCGAGGAAT CGCAGGAGGTGAATTCGTGGACGGTAAAGCCAGGCAACAGCCTTGTGAACCTCAGGAGCATTTCCTTGCCATCTTGA
AA sequence Show only first row Show all	>Lus10033725 pacid=23143303 polypeptide=Lus10033725 locus=Lus10033725.g ID=Lus10033725.BGIv1.0 annot-version=v1.0 MDQGRPVFTVDLLERYATKGRGVITAMAAGNDVIVLGTSKGWVVRHDFGVGDSYDIDLSAGRPGEQSIHRVFVDPGGSHCIATVVGTGGAETYYTHAKWS KPRALSRLKGLVVNAVAWNRQQITEASTKEVILGTDNGQLFEMAVDEKDKREKYLKFIYELKELPEAFMGLQMETANLGSGTRYYVMAVTPTRLYSYTGI GSLEVSLGSDEYSPSLNELLFFIKQRRATHFAWLSGAGIYHGGLNFGAQHSYPNGDENFVENKALLSYSKLSEGSEVVIPTSLAGSEFHFLLLIGNKVKV VNRISEHIVEELHFDLAPESVSRGIIGLCSDATAGLFYAYDQNSVFQVSVNDEGRDMWKVYLNMKEFAAALANCRDPCQRDQVYLVQADAAFSLRDFQRA ASFYAKDALRTFLLHRLDNLTKDDKCQITMISTWATELYLDKINRLLLEEDSAIENHSAEYQSIIQEFRAFLSDSKDVLDEATTMKLLESYGRVEELVYF ASLKEQHEIVIHHYIQQGESKKALEVLQKPAVPIDLQYKFAPDLIALDAYETVESWMGTKNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHN EDTGIHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRK KLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLEDYNKQIEQLKEEMNDATHGADNIRNDINALAQRYAVI DKDEDCGVCKRKILNMGVDYRLSRGYTSVGPIAPFYVFPCGHAFHSECLIAHVTRCTTESQAERILDLQKQLTLLGDGARKDQNGSMFDEPVSSTTNADK LRSQLDDAVAGECPFCGELMIREISMPFILTEESQEVNSWTVKPGNSLVNLRSISLPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12470			zinc ion binding (.1)		Lus10033725 [exp]	0	1
AT5G62620			Galactosyltransferase family p...		Lus10042164 [exp]	3.9	0.9300
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	4.0	0.9113
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10011819 [exp]	10.1	0.9161
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	10.6	0.9026
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10010274 [exp]	15.8	0.8991
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	16.2	0.9181
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002074 [exp]	20.1	0.8989
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	22.2	0.8655
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10001319 [exp]	23.8	0.9092
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	26.5	0.9099

Compare expression of checked genes

Lus10033725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.