Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20900 692 / 0 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4) AT4G28130 596 / 0 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT4G30340 240 / 1e-72 ATDGK7 diacylglycerol kinase 7 (.1) AT2G18730 238 / 8e-72 ATDGK3 diacylglycerol kinase 3 (.1) AT5G57690 237 / 1e-71 ATDGK4 diacylglycerol kinase 4 (.1) AT5G63770 144 / 6e-37 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G07920 112 / 6e-26 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031612 [exp] 938 / 0 AT2G20900 719 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10039747 [exp] 776 / 0 AT2G20900 751 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10018527 [exp] 694 / 0 AT2G20900 681 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10015514 [exp] 251 / 9e-77 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1) Lus10019987 [exp] 250 / 2e-76 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10006991 [exp] 239 / 5e-72 AT2G18730 677 / 0.0 diacylglycerol kinase 3 (.1) Lus10010896 [exp] 137 / 5e-34 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10012719 [exp] 136 / 1e-33 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10008907 [exp] 127 / 1e-33 AT2G18730 322 / 1e-109 diacylglycerol kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G148500 [exp] 721 / 0 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.001G408500 [exp] 629 / 0 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.018G096700 [exp] 246 / 6e-75 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.006G174700 [exp] 242 / 1e-73 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.007G097900 [exp] 144 / 3e-36 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.005G070900 [exp] 137 / 6e-34 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.012G066300 [exp] 116 / 4e-27 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.006G172400 [exp] 42 / 3e-05 AT5G57690 83 / 2e-20 diacylglycerol kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [flax] [poplar] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10033732 pacid=23143284 polypeptide=Lus10033732 locus=Lus10033732.g ID=Lus10033732.BGIv1.0 annot-version=v1.0 ATGGGTAATCACGCGCCACCGCCGCCGAGAGTTGCCGCGGAAGGGAGGGAGGCTGAAGACAGCGGCGGTTCTGGTCGCCGGAGCAGCGGGAGAAAACCCG GCCGGCCATGTTTCAGATTACGCAAGATGGAAACGTCGTCAATGGATTCAAACGCGGAGGCGAATTTTCTGAAGGATTTCTACATCCCTACGTATGTAGT CGCGCCAGAATCAGAGGCCGGGAGTGTTGTGCCTAAGGAGCCGGAGTGTCCAGTTCTGGTGTTCATCAACTCCAAGAGTGGTGGTCAGCTTGGCGGACAT CTTCTCCTAACATATCGATCGGTTCTAAATGAACATCAGGTCTTTGATCTTGGGGAGGAAACGCCTGATAAAGTTCTGAGGAAGATATATTTGAATATTG AGAGGCTTAAATCTGGAGGTGATGAGCTGGCTGCTAAGATTCAGGAGAAACTTAAAATAATTGTTGCTGGTGGTGATGGAACTGCTGGCTGGCTTCTGGG AGTTGTTTGTGATCTCAAGTTTCCTCATCCGCCTCCAATTGTGACTGTTCCTTTGGGAACTGGAAACAATCTTCCGTTTGCTTTTGGCTGGGGGAGGAAG AATCCTGGGACAGATCGTCCATCTGTAATTGCCTTTCTTAAAGAAGTGATGAAAGCAAAGGAAATGAAAATCGACAACTGGCACATTCTGATGAGGATGA AGACCCCTAAAGAGGGTTCTTGTGAACCCATTGCACCTCTCGAGTTACCACATTCTCTACATGCAGTTCATCGTGTCTCTTCTTCGGACGAATTGAATGA GGAAGGCTGTACTACATTTCGCGGTGGATTCTGGAACTACTTTAGCCTGGGCATGGATGCTCAAGTATCTTTTGCATTCCATTCTGAGAGGAAACGGCAT CCTGAAAAATTCAAGAACCAGCTTGTTAATCAGAGCACTTACGCAAAGCTTGTTGGTACACAAGGATGGTTTTGTCCTTCGGTATTTCAATCCGACTCAA GGATAGCTAGCCTGCTAAAGGTGAAAGTCATGAGACGACTCGGGCACTGGGAAGATCTAACTATACCGAATGGCATAAGATCAATAGTGTGCCTCAACTT GCCCAGCTTTTCCGGCGGACTAAATCCTTGGGGAACACCCAGTAGTTGGAAAAGTCGTGATAGACAGTTAACCCGGCCATATGTGGACGATGGCCGTATC GAGGTGGTTGGTTTTAGAGACGCTTGGCATGGACTCGTTCTCCTCGCTCCAAAAGGACACGGAACTCGTCTCGCACAGGCACACAGAATCCGGTTTGAGT TCCACAAAGGCGTTGCGAACCACACATACATGAGGATCGACGGGGAGCCCTGGAAGCAACCTTTGCCAGTCGAAGAAGACGATGACCCAGTGGTGGTGGA GATCTCTCACTTAGGACAGGTGAACATCCTGGCCACGAACGATTGCAGATCGAAGAGCGTGAACGATCCCAAGACCCCGAGCCACGCGAGCCAGCACAGG CGCGATGAAGAGGATGGTGATAGCGGGGAGGATGATGATTCGGTACTAGGGGAAGAGTTCAGCAAGTTCGGTGCGGCTGATACGTTCAAGTTGCCAGAGG AGTTTAGAGTCAAGTTGCCAGAGGAGTTTGACGTTTCTCATCTTAGTTAG
AA sequence Show only first row Show all	>Lus10033732 pacid=23143284 polypeptide=Lus10033732 locus=Lus10033732.g ID=Lus10033732.BGIv1.0 annot-version=v1.0 MGNHAPPPPRVAAEGREAEDSGGSGRRSSGRKPGRPCFRLRKMETSSMDSNAEANFLKDFYIPTYVVAPESEAGSVVPKEPECPVLVFINSKSGGQLGGH LLLTYRSVLNEHQVFDLGEETPDKVLRKIYLNIERLKSGGDELAAKIQEKLKIIVAGGDGTAGWLLGVVCDLKFPHPPPIVTVPLGTGNNLPFAFGWGRK NPGTDRPSVIAFLKEVMKAKEMKIDNWHILMRMKTPKEGSCEPIAPLELPHSLHAVHRVSSSDELNEEGCTTFRGGFWNYFSLGMDAQVSFAFHSERKRH PEKFKNQLVNQSTYAKLVGTQGWFCPSVFQSDSRIASLLKVKVMRRLGHWEDLTIPNGIRSIVCLNLPSFSGGLNPWGTPSSWKSRDRQLTRPYVDDGRI EVVGFRDAWHGLVLLAPKGHGTRLAQAHRIRFEFHKGVANHTYMRIDGEPWKQPLPVEEDDDPVVVEISHLGQVNILATNDCRSKSVNDPKTPSHASQHR RDEEDGDSGEDDDSVLGEEFSKFGAADTFKLPEEFRVKLPEEFDVSHLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	0	1
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	1.4	0.9004
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10030496 [exp]	6.9	0.8756
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	8.6	0.9057
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10022747 [exp]	8.8	0.8671
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	9.2	0.8962
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	10.0	0.8921
AT1G77220			Protein of unknown function (D...		Lus10018920 [exp]	10.2	0.8798
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10032097 [exp]	12.3	0.8733
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	14.3	0.8813
AT2G27480			Calcium-binding EF-hand family...		Lus10019545 [exp]	14.5	0.8877

Compare expression of checked genes

Lus10033732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.