Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26667 335 / 3e-117 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G60180 305 / 2e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G25280 236 / 1e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G60961 204 / 2e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G35170 104 / 5e-25 adenylate kinase family protein (.1.2) AT5G47840 97 / 2e-23 AMK2 adenosine monophosphate kinase (.1) AT5G63400 87 / 5e-20 ADK1 adenylate kinase 1 (.1.2) AT5G50370 84 / 6e-19 Adenylate kinase family protein (.1) AT2G37250 84 / 2e-18 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 76 / 1e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031611 [exp] 416 / 1e-148 AT5G26667 343 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10019509 [exp] 238 / 3e-79 AT5G26667 217 / 5e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10031714 [exp] 239 / 3e-73 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031135 [exp] 219 / 5e-71 AT4G25280 263 / 3e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037995 [exp] 94 / 5e-23 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10009228 [exp] 96 / 9e-23 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10003504 [exp] 91 / 2e-21 AT5G47840 300 / 1e-102 adenosine monophosphate kinase (.1) Lus10036326 [exp] 93 / 4e-21 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10009478 [exp] 89 / 4e-21 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043300 [exp] 358 / 4e-126 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134600 [exp] 357 / 8e-126 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G104700 [exp] 276 / 9e-94 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G129000 [exp] 238 / 3e-78 AT4G25280 301 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G078200 [exp] 96 / 4e-23 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.013G103400 [exp] 94 / 4e-22 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.018G113400 [exp] 96 / 8e-22 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.008G046100 [exp] 84 / 1e-18 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.010G215300 [exp] 83 / 3e-18 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.015G092800 [exp] 80 / 3e-17 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Lus10033733 pacid=23143434 polypeptide=Lus10033733 locus=Lus10033733.g ID=Lus10033733.BGIv1.0 annot-version=v1.0 ATGGGATCCGCCGTTGAAGCTGGAAACACGATAAAATATGCAAGTTTAGCTGAGAAGAAGCCGACTGTTGTTTTCGTGCTGGGTGGCCCGGGTAGTGGAA AGGGTACACAGTGCACAAACATTGTGGAGCACTTCGGTTATACCCATCTAAGTGCTGGTGATCTTCTTCGAGCAGAGATCAAGTCTGGATCTGACAATGG AACCATGATCCAGAACATGATTAAGGAGGGAAAGATTGTGCCCTCCGAGGTGACAATAAAGCTGCTCGAGAAGGCAATACTGGATAATGGAAATGACAAA TTCCTTATTGATGGTTTTCCCCGTAATGAGGAAAACAGAGCTGCATTTGAAGCTGTTACCAAAATCGAGCCGGAATTCGTCCTCTTTTTCGATTGTCCAG ATGAAGAGATGGAAAGGAGGATTCTGAGTAGGAACCAGGGAAGAGAAGATGATAACATTGAGACAATAAGGAAGCGTTTTAAGGTCTTTCTTGAGTCTAG CCTTCCAGTGATTGAGTACTATGCTTCCAAGGGTAAAGTTAAGAAGGTTGATGCTGCCAAATCTGTCGAAGAGGTTTTCGAGGCAGTGAAGGTCATTTTT ACCCCGAAAGAGGATAAGTCCGGTGGTTTGCAGAAGCTCCTTTCACCGTGCCAACAATCGGAGATCTTGCACCGGAATCTAGAACTGGGTCATAAATTAC AATCCAAATCTGCAACTGGGTCGTCAAGATCCATCGCCCGCTCTCTCGCCACCGCAGCCTCCCTTCACTACTTCTCACCGCAATTTTCCACGCCGCCGGC TGGTTGTCGTCTGCCTCACGCAGTTGTTCCATCTCCAATTCAGGTAACGTTTGAGAATCCCGCCATTTCTGCATCTGAAGGACATGATTGA
AA sequence Show only first row Show all	>Lus10033733 pacid=23143434 polypeptide=Lus10033733 locus=Lus10033733.g ID=Lus10033733.BGIv1.0 annot-version=v1.0 MGSAVEAGNTIKYASLAEKKPTVVFVLGGPGSGKGTQCTNIVEHFGYTHLSAGDLLRAEIKSGSDNGTMIQNMIKEGKIVPSEVTIKLLEKAILDNGNDK FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCPDEEMERRILSRNQGREDDNIETIRKRFKVFLESSLPVIEYYASKGKVKKVDAAKSVEEVFEAVKVIF TPKEDKSGGLQKLLSPCQQSEILHRNLELGHKLQSKSATGSSRSIARSLATAASLHYFSPQFSTPPAGCRLPHAVVPSPIQVTFENPAISASEGHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10033733 [exp]	0	1
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	1.4	0.9148
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10022465 [exp]	2.8	0.8908
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	3.2	0.8982
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	3.5	0.8959
AT5G27490			Integral membrane Yip1 family ...		Lus10031511 [exp]	8.4	0.8531
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10041261 [exp]	9.5	0.8636
AT5G27490			Integral membrane Yip1 family ...		Lus10015189 [exp]	11.0	0.8497
AT3G54120			Reticulon family protein (.1)		Lus10035537 [exp]	11.4	0.8027
AT4G30390			unknown protein		Lus10020378 [exp]	13.9	0.8133
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	13.9	0.8638

Compare expression of checked genes

Lus10033733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.