Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34270 668 / 0 Exostosin family protein (.1) AT2G35100 267 / 3e-84 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 261 / 4e-82 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G67410 243 / 4e-75 Exostosin family protein (.1) AT3G45400 240 / 2e-73 exostosin family protein (.1) AT1G74680 234 / 2e-71 Exostosin family protein (.1) AT3G03650 229 / 2e-69 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT5G16890 228 / 2e-68 Exostosin family protein (.1) AT4G38040 79 / 2e-15 Exostosin family protein (.1) AT4G32790 76 / 3e-14 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031610 [exp] 933 / 0 AT1G34270 685 / 0.0 Exostosin family protein (.1) Lus10036219 [exp] 263 / 2e-81 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10038355 [exp] 259 / 5e-81 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10015791 [exp] 234 / 2e-71 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 233 / 3e-71 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10039145 [exp] 228 / 2e-68 AT5G16890 679 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 225 / 2e-67 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10005684 [exp] 226 / 5e-67 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 223 / 1e-66 AT3G45400 622 / 0.0 exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G086800 [exp] 711 / 0 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.013G116200 [exp] 696 / 0 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.012G124600 [exp] 257 / 6e-80 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 254 / 4e-79 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.008G034500 [exp] 246 / 2e-76 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.019G044600 [exp] 223 / 1e-66 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.002G210000 [exp] 221 / 5e-66 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.013G067400 [exp] 220 / 2e-65 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G049800 [exp] 219 / 2e-65 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 84 / 1e-19 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10033734 pacid=23143468 polypeptide=Lus10033734 locus=Lus10033734.g ID=Lus10033734.BGIv1.0 annot-version=v1.0 ATGGCGTTTATTCTGCAGATACTTCTAATGGTGGGTGGCTACTACAAAAGAACCCAACTTCCATGTTCAATTGTTTCAACTTTCTTAGCATTCATAGCTA TTTCCCTTCTTTCCTTATTCTACTTCAACTTCTACTCAGCCTCATCGTCTCAGAAGTTTATAACACAATCCCAAACCAATATCCACACTCCCCAAAATTC CATCAAGGTCTATGTAGCAAACCTCCCTAGGTCTCTAAACTATGGTCTCTTGGAGAGATATTGGTCCTCGTGGGGACCCGATACTCGTATTAGCAACGAT CCAGATCACTCTCCGGGCAAAAAGAACCCCGTCTCTTTACGCGGAGACACCAAGTTTCCTCCTTACCCGGAGAATCCAGTGATCAAGCAGTATAGCGCTG AGTACTGGATCTTGGGGGACTTGATGACGCCAGAAAATTCGAGGACGAATTCGTTTGCAAAGAGGGTGTTTGATGAGAGGGAGGCTGATGTTGTATTCGT GCCCTTTTTTGCCGCGTTGAGTACAGAGATGGAGCTTGCAAGGGGGAAAGGTACGTTTAGGAAGAAGGACGGGAACGAGGATTACCAAAGGCAGAAGGAG ACGCTCGATTTTGTTATGAATACGGAAGCTTGGAAGCGATCTGGTGGTCGCGATCATGTTTTTGTTCTCACTGACCCGGTAGCGATGTGGCATGTGAAAG CTCAGATAGCTCCAGCTGTGCTTCTGGTTGTTGATTTCGGTGGCTGGCATAGGCTTGACTCGAAATCATCAAATGGAAGCTCGTCGGGCAAGATACAACA TACTCAAGTTTCTCTGCTCAAAGATGTGATAGTTCCTTACACACACTTACTCCCTCAGTTGTCCTTGTCGGAGAATTCGAAGCGCAACACTCTTCTGTAC TTCAAAGGAGCCAAACATAGGCACGGGGGCGGTGTGGTTCGAGAAAAATTATGGGAGTTGCTGGTTAACGAGCCAGGAGTTATAATGGAAGAAGGGTTTC CTAATGCAACCGGAAGGGAGCAATCGATCAGAGGGATGAGAACATCGGAGTTCTGTCTCCACCCAGCCGGAGACACCCCAACTTCCTGCCGTTTATTCGA TGCCATCCAGAGCCTATGCATTCCAGTCATCGTCAGCGACAGCATTGAGCTTCCGTTTGAAGGTACGGTAGATTACTCTGAATTCTCGGTTTTCGTGGCA GTCTCGGACGCCTTGAAGCCAGACTGGCTCGTACATCACCTGCGGAGCATCTCCGAGCGGGAGAAGGAACGATTTCGTCGTGAGATGTCGATGGTGCAGC CGGTTTTCCAGTACGAGAACGGACATCCCAGCGGGATAGGACCTGTACCTCCTGATGGTGCGGTGAACTACATATGGAGAAAGGTTCACCAGAAGTTGCC CATGATTAAGGAAGCCATTGTGAGAGAGAAGAGGAGGCCTCCTGGTGTTTCTGTTCCTCTGCGTTGCCAATGTACTTGA
AA sequence Show only first row Show all	>Lus10033734 pacid=23143468 polypeptide=Lus10033734 locus=Lus10033734.g ID=Lus10033734.BGIv1.0 annot-version=v1.0 MAFILQILLMVGGYYKRTQLPCSIVSTFLAFIAISLLSLFYFNFYSASSSQKFITQSQTNIHTPQNSIKVYVANLPRSLNYGLLERYWSSWGPDTRISND PDHSPGKKNPVSLRGDTKFPPYPENPVIKQYSAEYWILGDLMTPENSRTNSFAKRVFDEREADVVFVPFFAALSTEMELARGKGTFRKKDGNEDYQRQKE TLDFVMNTEAWKRSGGRDHVFVLTDPVAMWHVKAQIAPAVLLVVDFGGWHRLDSKSSNGSSSGKIQHTQVSLLKDVIVPYTHLLPQLSLSENSKRNTLLY FKGAKHRHGGGVVREKLWELLVNEPGVIMEEGFPNATGREQSIRGMRTSEFCLHPAGDTPTSCRLFDAIQSLCIPVIVSDSIELPFEGTVDYSEFSVFVA VSDALKPDWLVHHLRSISEREKERFRREMSMVQPVFQYENGHPSGIGPVPPDGAVNYIWRKVHQKLPMIKEAIVREKRRPPGVSVPLRCQCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34270			Exostosin family protein (.1)		Lus10033734 [exp]	0	1
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10011445 [exp]	21.1	0.8452
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039812 [exp]	34.6	0.8338
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	53.2	0.8300
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	53.7	0.8266
AT4G35783		RTFL6, DVL17	DEVIL 17, ROTUNDIFOLIA like 6 ...		Lus10041846 [exp]	67.1	0.8083
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10018179 [exp]	67.9	0.8085
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10028274 [exp]	86.1	0.7879
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	93.5	0.8061
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10007897 [exp]	98.3	0.8149
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	101.4	0.8143

Compare expression of checked genes

Lus10033734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.