Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03270 204 / 2e-63 CYCD6;1 Cyclin D6;1 (.1) AT1G70210 112 / 3e-28 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 97 / 1e-22 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G67260 93 / 6e-21 CYCD3;2 CYCLIN D3;2 (.1) AT5G10440 91 / 1e-20 CYCD4;2 cyclin d4;2 (.1) AT4G34160 89 / 1e-19 CYCD3;1 CYCLIN D3;1 (.1) AT3G50070 86 / 1e-18 CYCD3;3 CYCLIN D3;3 (.1) AT2G22490 82 / 4e-17 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT4G37630 64 / 4e-11 CYCD5;1 cyclin d5;1 (.1.2) AT1G44110 48 / 8e-06 CYCA1;1 Cyclin A1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031608 [exp] 494 / 9e-177 AT4G03270 211 / 4e-66 Cyclin D6;1 (.1) Lus10039738 [exp] 316 / 3e-106 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1) Lus10018520 [exp] 206 / 6e-64 AT4G03270 163 / 4e-48 Cyclin D6;1 (.1) Lus10018411 [exp] 162 / 3e-47 AT4G03270 152 / 4e-44 Cyclin D6;1 (.1) Lus10002587 [exp] 162 / 3e-47 AT4G03270 169 / 8e-51 Cyclin D6;1 (.1) Lus10029194 [exp] 114 / 7e-29 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 114 / 1e-28 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10019825 [exp] 89 / 2e-19 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10018739 [exp] 87 / 8e-19 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118600 [exp] 293 / 1e-97 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1) Potri.013G149000 [exp] 273 / 4e-90 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1) Potri.011G040900 [exp] 244 / 9e-79 AT4G03270 213 / 1e-67 Cyclin D6;1 (.1) Potri.004G032100 [exp] 224 / 3e-71 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.011G040500 [exp] 211 / 1e-66 AT4G03270 178 / 7e-55 Cyclin D6;1 (.1) Potri.008G146600 [exp] 117 / 7e-30 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 108 / 6e-27 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.002G103500 [exp] 107 / 3e-26 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 106 / 5e-26 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.014G023000 [exp] 96 / 7e-22 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033736 pacid=23143248 polypeptide=Lus10033736 locus=Lus10033736.g ID=Lus10033736.BGIv1.0 annot-version=v1.0 ATGGAGGAATTCAACCTCGAAAACCCACTAACAAATTACACAGAACTCCACTCCAATACTTCCCATTCACTCTTCTTCGTCGAATCTGAACACACTCCTT CCTTCTCCTTCTCCGACTCCCTCATTTCCTTTCGCCAGGAAGCCATTTCCACCATCTCACAGGTCTCCTCATGTAACTTCTTCAGTAATGCACCATTTCT CTCCTATCTCGCTGTAAACTACCTCGACCGGTTCATATCCAGCAATGGCATTCCTGTAATTACGATTCCTCAAAACAATCCTTGGCTGGTCAAGCTTCTT GCAGTCTCTTGCGTTTCTCTAGCAGCGAAAATGATGAACAAAGCCACAGATTCATCCCTTAAAAACATACAGAAACAGGGGAATGTTAATGTCAAATTCG GATTCGGATTTGAGTTCGACCCGAGAACGATTCAGAGAATGGAGAGGCTAATCCTCGGAGCACTGAAATGGAGAATGCGATCCGTGACTCCTTTCTCCTT CTTGTCCTTCTTCGCCGTTTACTTCAAACTCAAAGACCCGCCATTGTTGCAGGCGCTCAGAGCTCGAGCCACCCAAATCATCCTCCGAGCACAACTCGAG GTGAAGATGGTGGGAGTGAAGCCATCGGTGATTGCTGCATCGGCGCTACTGTCAGCTTGTCACGAGCTGTTCCCGTTGCAGTTTTCGTGCTTCAGAGATG GGATCCTCAGCTGTTCATATGTAAACCAGGAAGTGATGGCGGAGAGCTACAAGGAGATGCAAGAGCTGGCAATGGAAGAGTACGAGTCAGTGATGGACAG ATCAGTGTCGTCCAGCTCCTCCGATACGCCGGTCAACATCCTTGACCACCGATTCTCGAGCTCGTCGTCATCAGAGGACCAACTGAAAGCTACCGGGACC ATTTTCTCCACCGCCAGCAGCAGCAGCAGAAGAAGCAGTACTAGTACTGGCGAAGCGGTTATAATGCCGTCAGAGAGTGATGGCAGAGAGACAGTGAAGA AGAAGAAAGTGATTATCAACGGTAACAAAAGTACCAAAAGAAGGAAGACTAATGATTACTGCTGA
AA sequence Show only first row Show all	>Lus10033736 pacid=23143248 polypeptide=Lus10033736 locus=Lus10033736.g ID=Lus10033736.BGIv1.0 annot-version=v1.0 MEEFNLENPLTNYTELHSNTSHSLFFVESEHTPSFSFSDSLISFRQEAISTISQVSSCNFFSNAPFLSYLAVNYLDRFISSNGIPVITIPQNNPWLVKLL AVSCVSLAAKMMNKATDSSLKNIQKQGNVNVKFGFGFEFDPRTIQRMERLILGALKWRMRSVTPFSFLSFFAVYFKLKDPPLLQALRARATQIILRAQLE VKMVGVKPSVIAASALLSACHELFPLQFSCFRDGILSCSYVNQEVMAESYKEMQELAMEEYESVMDRSVSSSSSDTPVNILDHRFSSSSSSEDQLKATGT IFSTASSSSRRSSTSTGEAVIMPSESDGRETVKKKKVIINGNKSTKRRKTNDYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	0	1
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	1.0	0.9765
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	2.0	0.9626
AT1G67040			unknown protein		Lus10033565 [exp]	2.0	0.9607
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	2.4	0.9620
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	4.9	0.9556
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	5.9	0.9589
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	6.3	0.9495
AT1G04650			unknown protein		Lus10011755 [exp]	6.3	0.9459
AT1G14430			glyoxal oxidase-related protei...		Lus10013274 [exp]	7.7	0.9420
AT3G48200			unknown protein		Lus10035212 [exp]	8.9	0.9398

Compare expression of checked genes

Lus10033736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.