Plant FIBer expression Database

Lus10033739 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033740
[exp]
142 / 2e-41 ND /
Lus10031606
[exp]
135 / 2e-38 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G119000
[exp]
55 / 1e-08 AT5G08240 52 / 1e-07 unknown protein
Potri.013G149300
[exp]
44 / 8e-05 AT5G23160 56 / 5e-09 unknown protein
PFAM info
Representative CDS sequence
>Lus10033739 pacid=23143485 polypeptide=Lus10033739 locus=Lus10033739.g ID=Lus10033739.BGIv1.0 annot-version=v1.0
ATGAAGAGAAGCGGATCCAAGAACAAGTTCATGACGTGTTTCCGTCCCGGATTCGCCATCGAAGACATGATTCTCGACGATGGGTTTTCGAAATCGGCCA
ACATCAATCGCTCCAAGAGTCACACCTCTCTAATTCCCACCACCCATGAGGGATTAATCCTGGATCGCTCTGTTTCCGATTGCTCTGCTTTCTCCGCCGG
CGGCGTACGGAATTCCCAGTCCGACAAGGCCGTCGTTGCTCTTCCGAGGAGGAAGAGCTTCTCCCGAGCTTTCAAGGCCATTGTTTCCGAGATGTTCCAC
TCGCCGCGAAGTGGTGGTAAGGATCGGAAATCTCGAAACAGGGGATCCGACTTCTCGACCAGGACGAAGTACTCCACGGATCAGGACGGGTACGATTCGG
TCCGGAAGGAGTTCAGATCCTCGTCGGCTTCATCACCTTCTTCTTCATCGTCGGCAGCGTCGGCTTCGAGCTCGGACTCTGAAAGCCCATCGACAACGAG
GACGACTCGCCGGAAACCCGACCCGAACAGAGGAGGCAATTTGGCGTTGTTTCTACTGGTATTGGTGAGTCTGGCGGTGACGGTACTGGGAGGGAAGTTA
CTGGGGGTGGCGTTGACGTCGGTTTACCTGTATCTGATGCCTCGCCGGCGGGGGATTGTCTGCGGCGATTCTGGCAAGGAAGATGGGAGGAGGTCGCCGG
AAAAAGGAAGGTCGTCGGAAACAGAGTATAGAAAACAGAGGGTGGTGATGCAAGGGATGTTGAAGAGGAGCAACCGGCGGGAGAATCTTCAGATGGTTAA
GTGA
AA sequence
>Lus10033739 pacid=23143485 polypeptide=Lus10033739 locus=Lus10033739.g ID=Lus10033739.BGIv1.0 annot-version=v1.0
MKRSGSKNKFMTCFRPGFAIEDMILDDGFSKSANINRSKSHTSLIPTTHEGLILDRSVSDCSAFSAGGVRNSQSDKAVVALPRRKSFSRAFKAIVSEMFH
SPRSGGKDRKSRNRGSDFSTRTKYSTDQDGYDSVRKEFRSSSASSPSSSSSAASASSSDSESPSTTRTTRRKPDPNRGGNLALFLLVLVSLAVTVLGGKL
LGVALTSVYLYLMPRRRGIVCGDSGKEDGRRSPEKGRSSETEYRKQRVVMQGMLKRSNRRENLQMVK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10033739
[exp]
0 1
AT2G41510 ATCKX1, CKX1 cytokinin oxidase/dehydrogenas... Lus10035433
[exp]
2.2 0.8646
AT3G13050 AtNiaP nicotinate transporter, Major ... Lus10037295
[exp]
4.0 0.8577
AT1G26870 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain co... Lus10015367
[exp]
8.0 0.8716
AT1G67710 GARP ARR11 response regulator 11 (.1) Lus10006446
[exp]
9.7 0.8803
AT4G24040 TREHALASE1, ATT... trehalase 1 (.1) Lus10023035
[exp]
22.5 0.8787
Lus10034710
[exp]
24.0 0.8532
AT2G33580 Protein kinase superfamily pro... Lus10019662
[exp]
32.8 0.8494
AT2G39510 nodulin MtN21 /EamA-like trans... Lus10040311
[exp]
33.9 0.8294
AT4G21200 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELL... Lus10012912
[exp]
35.6 0.8010
AT5G45310 unknown protein Lus10001616
[exp]
36.9 0.8017

Lus10033739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.