Plant FIBer expression Database

Lus10033740 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031606
[exp]
388 / 2e-138 ND /
Lus10033739
[exp]
147 / 3e-43 ND 41 / 5e-04
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G149300
[exp]
41 / 0.0003 AT5G23160 56 / 5e-09 unknown protein
PFAM info
Representative CDS sequence
>Lus10033740 pacid=23143291 polypeptide=Lus10033740 locus=Lus10033740.g ID=Lus10033740.BGIv1.0 annot-version=v1.0
ATGAAGAGAATTGGTTCAAGAAACAAGTTGCTGGCCTGCTTCCGCCCGGATTTTCACATGGAAGAGATGATTGCCAATGATGGGTTATTCCTCACCAGAT
CCAAATCCGCCGCCTTACTCGCCGGCGAGAAAAATTCGAAGCCAATCCTGCATCGCTCTGTTTCCGATTGCTCTGCTTCAACTGCCGGCGTAAATTCAGA
AAACTCCGATTCCGACGAGACTACAGTCGTTGAGCACCGTATTCGAAAGAGGAAAAACTTTTCCCGTGCTGTCAAGTCCATCGTTTCCGATCTCTTCCAC
TCCAAATCTAAACACCGGAGATCCCGGAATCAGGGCTCCGACTTGACTACCCGGTCGGAATCGGACCCGGAAGAGCACGATGCTACCCGAAAGGAATCGT
GCTCGTCGGTTTTGGGTTCGGACCCGGAGAACAACTCAACGGCGGGGAGGATTCGGGGACCCGACCCGGACCCTGATCAGAAGAAAGCGGCCAATTTGAA
ATTGTTTGTACTGCTGTTAGTGAGTTTGGCGGTGACGGTACTCGGCGGTCAATTATTGGGTATGGCCTTGACTTCGATTAGTTTGTATTCAATCCCTCAC
CGGCGAGTGATTGCCGGAGGGTCGTCGGAAACAGAGTGCCGAAGAAAACAGAGGGTGGTGATGGAAGGAGGGATGAGGAGGAGCCATCGGCGGCAGAATC
TTCAGAGCATGGCATGA
AA sequence
>Lus10033740 pacid=23143291 polypeptide=Lus10033740 locus=Lus10033740.g ID=Lus10033740.BGIv1.0 annot-version=v1.0
MKRIGSRNKLLACFRPDFHMEEMIANDGLFLTRSKSAALLAGEKNSKPILHRSVSDCSASTAGVNSENSDSDETTVVEHRIRKRKNFSRAVKSIVSDLFH
SKSKHRRSRNQGSDLTTRSESDPEEHDATRKESCSSVLGSDPENNSTAGRIRGPDPDPDQKKAANLKLFVLLLVSLAVTVLGGQLLGMALTSISLYSIPH
RRVIAGGSSETECRRKQRVVMEGGMRRSHRRQNLQSMA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10033740
[exp]
0 1
AT5G65380 MATE efflux family protein (.1... Lus10015903
[exp]
3.2 0.8039
AT3G52820 ATPAP22, PAP22 purple acid phosphatase 22 (.1... Lus10021377
[exp]
5.5 0.7197
AT5G19590 Protein of unknown function, D... Lus10017733
[exp]
8.1 0.7656
AT3G11690 unknown protein Lus10029349
[exp]
11.0 0.7001
AT1G15960 ATNRAMP6, NRAMP... NRAMP metal ion transporter 6 ... Lus10041652
[exp]
13.4 0.6851
AT4G39850 AtABCD1, ACN2, ... PEROXISOME DEFECTIVE 3, COMATO... Lus10041691
[exp]
18.3 0.6482
AT4G01575 serine protease inhibitor, Kaz... Lus10030166
[exp]
19.0 0.7143
AT1G78620 Protein of unknown function DU... Lus10005554
[exp]
19.0 0.6912
AT4G25380 AtSAP10, SAP10 Arabidopsis thaliana stress-as... Lus10038901
[exp]
19.6 0.7236
AT4G14450 ATBET12 unknown protein Lus10021208
[exp]
22.8 0.7332

Lus10033740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.