Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 555 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 526 / 4e-175 ARK1 receptor kinase 1 (.1) AT1G65800 520 / 7e-173 ARK2 receptor kinase 2 (.1) AT1G11330 512 / 6e-170 S-locus lectin protein kinase family protein (.1.2) AT4G21390 505 / 4e-167 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 504 / 4e-166 S-locus lectin protein kinase family protein (.1) AT1G61610 499 / 9e-165 S-locus lectin protein kinase family protein (.1) AT4G11900 499 / 1e-164 S-locus lectin protein kinase family protein (.1) AT4G27290 496 / 1e-164 S-locus lectin protein kinase family protein (.1) AT1G61490 489 / 2e-161 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031603 [exp] 1214 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033743 [exp] 1081 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 1056 / 0 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10039733 [exp] 775 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 772 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039767 [exp] 763 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 744 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018516 [exp] 741 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10015422 [exp] 711 / 0 AT1G11330 324 / 5e-102 S-locus lectin protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150900 [exp] 615 / 0 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 608 / 0 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.001G409300 [exp] 561 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 549 / 0 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037100 [exp] 549 / 0 AT4G21380 982 / 0.0 receptor kinase 3 (.1) Potri.011G037300 [exp] 546 / 0 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 542 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028000 [exp] 542 / 0 AT4G21380 1020 / 0.0 receptor kinase 3 (.1) Potri.011G125651 [exp] 538 / 4e-180 AT4G27290 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 536 / 2e-179 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10033741 pacid=23143544 polypeptide=Lus10033741 locus=Lus10033741.g ID=Lus10033741.BGIv1.0 annot-version=v1.0 ATGGCTAATCCTTCATCAAAGTTTCTATGCGTTCACTTCTTCACTCTCCTCCTTCTGTATATGCACTCCGACCTCTGCCTGGCCAAGGATAGACTCACTA AGGGTCAATTCCTTTCGGGAAATCAAACCCTCATCTCTGCCGGCAGTGTATTCGAGCTCGGTTTCTTCTCTCCGAACAACTCCCTCAAATACTATTTGGG CATTTGGTACCACAAAATTTCACCCCAAACCGTGGTCTGGGTTGGGAACAGAAATGATCCCATTGACAACTTATCTTTTGCGCGGCTGGGCATGTACGAA CGAGACCTAGTACTTCTCACAGGAGCCCTGCCCCTGGTCTTGTTTACTGGTCCACCTGCACTACAGTCAAATCTGGTAGCTGTGCTCCAGGACGACGGCA ACTTCGTGATACCTGATTATCATTATTCCTTGCGGGAGGCGCTGTGGGAGAGCTTTGATTATCCGACGGATACACTTCTTCCAGGACAAATTTTGAACAA CCAACCCTTTAGTTCCTGGAATAGTGACCCTGATCCAGCGACAGGTCCGTACTCCCTCCAACTAGACCTCAAAGGGAAGGGTGATTTCTTAACTCTTTTC CAGAACGTTACCACCATGTACTCAATTTCCCCTACGAGATTCGGGTTCGGGGTAGCCTTCACGAATTCAGGAGGCAGGAAAACTAGAATCATCATGAACA GTGAAGGGATGGTTCAGAGACTTTCCTGGGTTGAAGCTTCGAAAATTTGGTCGTTGGACTGGCAGGAGCCACTAGACCACTGCCAGATTTTCGGCTACTG CGGCCCATTTGGGAGCTGTGACAAGGGCTCCAATCCACTATGTAGCTGTGCAACCGGGTTTATTCCGAAATCGGAGAAGGAATGGATCTTGGGAAATTTC TCCAGGGGTTGCGTGAGGAAGTCTAGTCTGGGATGCATGAATTCTGGAGGTGGTAATGATACCAATGGTGATATGTTTGTTCCAGGAAATGGGTTACCTT ATCTGGTTGGGCAGTCGTCAATTGAGGGTTTAAGTTATGTTGGTAGTGGTGAGCAATGTGAATCGGTTTGCTATTTTAGCTGCAATTGTGCTGCTTATTC TTTTCAGAGGAATAGGTGTTCCATTTGGACTGGGGAGGTTCTTAATCTCCATAAACTCGGTAAAGATCGGTACAACCAATCTGTGTACATAAGGATTGCA GGTTCTAAGAAACTTGCTGTTATAAAGAATCCTGACCATGTTCGGAGTAGTAGAAAGAGAATAGTGATTGTGGTTATTGTTGGCTCTGTGGTGGCCGGTA TTCTAGTTGCCCTACTGGGTTTGTTCTTGATATTGAGAGAAAATAAAACACGGAAAGCGGCAGTGAACATGGCTGATATTGAGCAAAACAAGTATGGAAT AGTCGTAGGAGGAGATGGCCAGAATGATACCCAGTTGAGCTTTTTCAGCTTTAAGGATGTATTGGCTGCTACTAATAACTTCTCTGAATCGAACAAGTTG GGCGAGGGTGGGTTTGGTCCCGTCTATAAGGGGAAGTTGATTGGTGACCAAGAAGTAGCAATGAAGAGGCTTTCCAAAAAATCCGGCCAAGGTTCAGAGG AATTTATGAATGAGTTAAAGCTCATTGCGAAGCTTCAGCATACTTATCTAGTCAGGCTTTTGGGGTGCTGTGTTGAGAGGGAAGAAAAGATACTGATATA CGAATACATGCCTAATCGGAGCTTGGACATGTTACTCTTTGGTTCATCAGATCAGGAAAAATTAAACTGGGGACAACGAGTTAAGATAGCGGAAGGTGTA GCTCAAGGACTTCTGTACATCCACAAGTATTCAAGACTCAAGGTCATTCACAGGGACATGAAGGCAAGCAACGTTCTGCTGGATGCAGCAATGAATCCCA AGATATCAGACTTTGGGATGGCGCGAATTTTCGGGATTGATCAGGATGAAGCAAGCACCAACCGTATAGTTGGCACATATGGATATATGTCTCCGGAATA CGCAAACTACGGACAGTTCTCGGAGAAATCTGACGTGTTTAGCTTTGGAGTGTTGTTATTGGAGATAGTGAGTGGAAAGAGGAACAAAGATTTCTATCAT CACGAAATCCCGTTCTCCCTTCTTTGTTGGGTATGGGAGCTTTGGAAAGAAGGGAAACCTGAAGAGCTGATTGATCCTGCAGTGAAGAACAGCCCCAGCT GCAATCCAACTGAAGCTATAAAGTTCATCCAAGTGGGTCTTTTGTGTGTGCAAGATGCTCCAGCTGACAGGCCAACAATGTCGTTAGTAACTCTGATGCT GTTGAGTAACGATTCTCAGTCATTCCCGTCGCCTGGAGAACCGGCCTTCGTCACTAGGAGAGCTGTTCCTGGGTACAGATATCAAGTTCCCTTGACTTGC TCAAACAACCAGGTTACAATTAGCTTGCCAACTGGTAGGTGA
AA sequence Show only first row Show all	>Lus10033741 pacid=23143544 polypeptide=Lus10033741 locus=Lus10033741.g ID=Lus10033741.BGIv1.0 annot-version=v1.0 MANPSSKFLCVHFFTLLLLYMHSDLCLAKDRLTKGQFLSGNQTLISAGSVFELGFFSPNNSLKYYLGIWYHKISPQTVVWVGNRNDPIDNLSFARLGMYE RDLVLLTGALPLVLFTGPPALQSNLVAVLQDDGNFVIPDYHYSLREALWESFDYPTDTLLPGQILNNQPFSSWNSDPDPATGPYSLQLDLKGKGDFLTLF QNVTTMYSISPTRFGFGVAFTNSGGRKTRIIMNSEGMVQRLSWVEASKIWSLDWQEPLDHCQIFGYCGPFGSCDKGSNPLCSCATGFIPKSEKEWILGNF SRGCVRKSSLGCMNSGGGNDTNGDMFVPGNGLPYLVGQSSIEGLSYVGSGEQCESVCYFSCNCAAYSFQRNRCSIWTGEVLNLHKLGKDRYNQSVYIRIA GSKKLAVIKNPDHVRSSRKRIVIVVIVGSVVAGILVALLGLFLILRENKTRKAAVNMADIEQNKYGIVVGGDGQNDTQLSFFSFKDVLAATNNFSESNKL GEGGFGPVYKGKLIGDQEVAMKRLSKKSGQGSEEFMNELKLIAKLQHTYLVRLLGCCVEREEKILIYEYMPNRSLDMLLFGSSDQEKLNWGQRVKIAEGV AQGLLYIHKYSRLKVIHRDMKASNVLLDAAMNPKISDFGMARIFGIDQDEASTNRIVGTYGYMSPEYANYGQFSEKSDVFSFGVLLLEIVSGKRNKDFYH HEIPFSLLCWVWELWKEGKPEELIDPAVKNSPSCNPTEAIKFIQVGLLCVQDAPADRPTMSLVTLMLLSNDSQSFPSPGEPAFVTRRAVPGYRYQVPLTC SNNQVTISLPTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	0	1
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	1.0	0.9279
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10040156 [exp]	3.5	0.8768
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	4.2	0.8892
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	4.6	0.8771
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	6.5	0.8685
AT3G53810			Concanavalin A-like lectin pro...		Lus10029315 [exp]	6.9	0.8395
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	7.7	0.8693
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10021021 [exp]	7.7	0.8576
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	8.5	0.8650
AT4G27290			S-locus lectin protein kinase ...		Lus10039767 [exp]	10.2	0.8501

Compare expression of checked genes

Lus10033741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.